Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3284 ATGGATGGTTTGAGTTGGGATGCCTCACAACTTGCAGCAAACACACCGATCCTGTGGAGTACTATCCAGCAACCACCAGATTTTGAAGGAGGCTACTCCATGCCCAACATTCTTAATCAAATGCAAGAGATGCAGAAAGCCCAAACAGGTCATGCATATTCAAATTCTGAAAGAGTGGTTTATCAATCAGCAGCTGCTACTACCACTTCTTTAGAGATAACGGATGTGATGCAAAAGCAAAACACAAATCTCTCACAGCATGTGTCAACCATGCCAGTGAAATCAGGAGCTGGTGCCAGTTGGGGAGAAGCCTTCACATCTCAATCATACCCTTCCCTATCTGTCAATGGACCTCATCACAGTATGAACCTGATTAGGCATTACATGCCAGATTTCAACATGgcccaccaccaccaacaacagCAACTTGTCAATGGCTCACAAAATGGGAAGGGTGCTTGCTCTCTTGAGTCTTTTGATTGCTTGATTTCAGCTACCAACAGCACCACAGACACATCTGTTGAAGATGATGGGATTTCAATGATCTTATCTGACTGTGGAAACTTGTGGAACTTCAGTTATGGCAGAGCAGCTTCCACTGGTGAATCTGACAGCAATGCTTCCGATGGTAGAAACAAAGACATGCAGTGTCCAGTCAATGAAGTTGATGAAACAGTTTCTCAAAGCTCCTCTGATCAATATGTCAAAACAATAGAATCATCAAAGGCTAATAATTGTTCAAAGAGGAGTCCTGATCAATCTGAAATGATCAAAGTTGGTGCCACTGCCAGTGATTCCTGCTTCAGTATTGTtcacaatttttcttctattgaaGAAGGTGGTTTCAGACTCATCTCAGATAATCCAACAAAATGCAAGAAACCCAGATGGGATATGAGTTCCTCttcaaataatatcaatttcCAGCAACCAAATTCATCCATGTCTTCTTCCATTGAAGAACCTGATCCAGAGGCAATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGAGGTGGTTGAAAAGCCTAAGAGGAAGCATGTAAGGATATCAACTGATCCACAAACTGCAGCTGCAAGGCACAGAAGGGAGAGAATAAGTGAGAAGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTAAGGTCACAGGTCAAGGCACTGGAAAGTCTAGGGAACAAAGTTGATGCAATGAATTGTCCTCCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACACCTCTCAGTCACATCCATAATCCCCAGGGTTGA 1368 0.4167 MDGLSWDASQLAANTPILWSTIQQPPDFEGGYSMPNILNQMQEMQKAQTGHAYSNSERVVYQSAAATTTSLEITDVMQKQNTNLSQHVSTMPVKSGAGASWGEAFTSQSYPSLSVNGPHHSMNLIRHYMPDFNMAHHHQQQQLVNGSQNGKGACSLESFDCLISATNSTTDTSVEDDGISMILSDCGNLWNFSYGRAASTGESDSNASDGRNKDMQCPVNEVDETVSQSSSDQYVKTIESSKANNCSKRSPDQSEMIKVGATASDSCFSIVHNFSSIEEGGFRLISDNPTKCKKPRWDMSSSSNNINFQQPNSSMSSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLEVVEKPKRKHVRISTDPQTAAARHRRERISEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNCPPTSIAFSFNPSFPMQTPLSHIHNPQG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3284 455 MobiDBLite consensus disorder prediction 293 320 - -
Ssu4g3284 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 422 IPR036638 GO:0046983
Ssu4g3284 455 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 453 IPR045843 GO:0003700|GO:0006355
Ssu4g3284 455 Coils Coil 399 419 - -
Ssu4g3284 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 409 IPR011598 GO:0046983
Ssu4g3284 455 CDD bHLH_AtIND_like 361 419 - -
Ssu4g3284 455 Gene3D - 362 427 IPR036638 GO:0046983
Ssu4g3284 455 SMART finulus 366 415 IPR011598 GO:0046983
Ssu4g3284 455 MobiDBLite consensus disorder prediction 295 320 - -
Ssu4g3284 455 Pfam Helix-loop-helix DNA-binding domain 369 409 IPR011598 GO:0046983
Ssu4g3284 455 PANTHER TRANSCRIPTION FACTOR BHLH87 1 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3284 Ssu-Chr4 82642242 82643609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3284 96 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.966 8.87e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g3284 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3284 - - vra:106773034 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3284 4 82642242 82643609 Ssu4g3284 4 82642242 82643609 ECH
Ssu8g0272 8 4714347 4715657 Ssu4g3284 4 82642242 82643609 PCT