Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3272 ATGGCGACAGTTCCAGGGCAGCTCGTGTGGGAGATCGTGAAGAAGAACAACTCCTTTTTGGTGAAACAGTTCGGACGGGGCACTCAGAGCGTCCAATTCAGCAAAGAGCCCAACAATCTCTACAACCTCAATTCGTTCAAATACTCTGGTTTGGCAAACAAGAAAACTGTTACCATTCAGCCTGTGGGTAAAGATCTGTCTGTGTTGTTTGCTACAACAAAGACGAAGAAGCAAAACAAGCCTGCTGCTTTGCTTCACAGATCTGTGATGAAGAAGGAGTTCCGGAGGATGGTAAAGGCTGTTGAAAATcagGTGGCAGAAAATTACTACAGGCCTGATCTCAAGAAGGCTGCTCTTGCAAGGTTGAGTGCTGTTCATAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAATAGACAGGCCGTGAAGGTCCCTGGTAGGAAGTGA 453 0.4658 MATVPGQLVWEIVKKNNSFLVKQFGRGTQSVQFSKEPNNLYNLNSFKYSGLANKKTVTIQPVGKDLSVLFATTKTKKQNKPAALLHRSVMKKEFRRMVKAVENQVAENYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQAVKVPGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3272 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Ssu4g3272 150 Gene3D - 6 133 - -
Ssu4g3272 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Ssu4g3272 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3272 Ssu-Chr4 82424016 82425754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3272 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.028 7.91e-74 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3272 K02903 - gmx:100500189 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3272 4 82424016 82425754 Ssu8g0277 8 4771738 4773331 ECH
Ssu4g3272 4 82424016 82425754 Ssu4g3272 4 82424016 82425754 ECH
Ssu8g0277 8 4771738 4773331 Ssu4g3272 4 82424016 82425754 PCT