Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3260 ATGTTTGGGAAGCACAATAGGTATAATATAGTACACACATATTTTGATTCCATTCCTCTTGTAGTTGTAGGTGTGTGCTTGGTGTTCTCCTTCTTGCTCTTCTTCAAGACAACCTCATCTTCAGATGCAATTTGTTATAAATGGGATAGTGCTCCTACACTGAACATGTCTTCTTTAAGTTTTCAAACTTTGAATGTTAAGATAATGAACTCTCATTGTTTCTCCTTTACTGGATTTACAGATAACTTCTCATGGATTTGCCTCGGAGATTTCAGTTTGACCTCTTTTTCCACCCAAAGGTGCATAATAGACATTGTCAACATATTTTTTGTGAGTGTCTTATATGTATCGTTGCTCATCAATCTGATCAAGAAAAACCCTGCAAGTGGTAGTAGCTACAGAAAGGGAAGGGTTCATGTAGTTGCTTCAGTATGTTGTACTCTTTTAAGCATTGCATATTTTATTGATAGCTTGTGGAATCTCATAGCCAAAACCACTGGCTTCAGTCAGCTGAACTTGTTAGTTTGCATTGTCAGAGGACTAGTTTGGATTTCTTTAGCAGTTTCATTGTCTGTTCAAGGATCCCAatggataaaaattttatgctcTATTTGGTGGTTGTCTTCATGTACATTGGTTTCAGCACTCAATGTTGAAATTCTGCTCAAAAAGcatacatttcaattttttgatatgGCAATATGGCCACTGCACATTCTAACCGTTCTCTGTGCCTTCCAAAACCACGGCCACTTTGTCACGCAAGAAACCCCAGATGCCATTTTATGTGAGCCTCTATTAGTTCATAAGGTCATGCATAAACAAACAGGACTAGGCCAAGCCTCCTTTCTCAGCAGATTCACTTTCTCTTGGATGAATGCTTTACTCAATTTGGGTTACTCAAAGCCACTAGCACTTGAAGACATCCCTTCTCTTGTTTCTGAAGATAAAGCGGATTTTGCCTACCAAAAGTTTGCACATGCATGGGATTCCCTTTTGAGGGAGAGGGGCAGGAACAATTCTACAAACTTGGTCCTATGGTCCATAGCCCGAGTTTACTTGAAAGAAAACTTCTTCATAGCCATTTGCACATTTCTCAGGGCAATTTGTGCTGTTGTTTCTCCTTTACTTGTCTATTCTTTTGTAAACTATTCCAGTCGCATTGAGGAAGAGTTAAAACAAGGAATGGCCATAGTAGGATGTCTTATATTTGCCAAGGTGGTTGAGTCTGTGTCTCAAAGGCATTGGTTTTTTAACTCAAGGAGCTTAGGAATGAAAACGAGATCTGCTTTAATGGCTGCAGTGTATCAAAAGcaattaaaactttcaactttgGGTAGGAGAAGGCATTCAACTGGTGAGATTGTGAATTATATTGCAGCTGATGCCTACCGAATGGGAGAGTTTCCATGGTGGTTTCATACATTATTGTTTTCTGCATTGCAACTTTTTCTGGCTGTTGGTGTACTTTTTGGTGTTGTGGGTCTAGGTGCTCTTCCTGGTTTAGTGCCTCTTCTCATTTGTGGATTTCTCAATGTACCATTTGCAAAGATCCTTCAAAAATGGAGGTCAGAATTTATGATTGCACAGGATGAACGTCTGAGGTCAACTTCAGAGATTCTAAGTAGTATGAAAATCATAAAGCTACAATCCTGGGAGGATAACTTCAAGAACGCTCCTTTGAATGCTGGCACTATCTTCACGGTTCTTGCAGCATTGAGAAGCATGGAAGAACCTGTCACATTGATTCCAGAAGCACTTTCTGTTCTGACCCAAGTTAAGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGATGAGATACGAAGAGATGATATTAGAAGAACTTCAAAACAAGATTCTTGCAGCAAGAGTGTTGAAATTCTAACAGGCAACTTCAGTTGGGATCAGCAATCAGTGCCTCCAACTTTGAGAGACGTGAATTTTGAGATCAAGTGGGGCCAGACAGTGGCAGTTTGTGGCCCAGTTGGAGCTGGAAAAACATCTCTCTTATATGCAATACTTGGAGAGATACCCAAAATTTCAGGAACTGTTAGTGTAAGTGGAACACTTGTCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAACCAGGTATAAATATACCATTAAGGTCTGTGCCTTGGATAAGGATATTGATGGATTTAGCCATGGTGGTCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGTGGACAAAAGCACAGGATTCAACTTGCTCGAGCTGTCTACAATGATGCCGATATCTATCTCCTAGATGACTCTTTTAGCGCTGTAGATGCTCATACTGCTTCTATTCTGTTTAATGATTGCATCAAGACTGCTTTAAGAAGGAAAACAGTGATTCTTGTGACTCATCAAGTTGAATTTCTCACAACTTCTAAGGCTTTCTTCTCTGCTTTCACTGATGCTATCTTTAATGCTCCTATGTTCTTCTTTGATTCAACCCCTGTAGGGAGGATTCTGACCCGAGCTTCATCAGATTTGagtattttagattttgatatCCCTTTTACCACAATCTTTGTATCATCTGAAGTAACTGAACTTCTGACTATGATTGGGATACTGGTTTCGGTCACATGGCAAGTGCTCATTGTTGCCGTTCTTGCCATGGTGGCTTCAAAATATATTCAGggCTATTATCAAGCCTCTGCAAGAGAAATTATACGGATCAATGGAACTACAAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGGGTGGTTACTATAAGAGCTTTCAACATGGCTGacagatttttcaaaaactacctTAACCTTGTTGACACAGATGCCACAATGTTCTTTCATTCTAATGCTGCCATCGAATGGTTGATTTTAAGGATTGAAGTACTTCAGAATTTGACACTCTTCACTGCAGCTTTGCTGCTTGTTCTACTTCCAAAGGGATATGTGACCCCGGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTACCAAATCTCTTGGACACTTCTGtGAGTGATGAAGGTGAAAACTGGAGTGTGGGGCAGCGCCAACTCATATGTTTAGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCTTCCATTGATTTTGCCACAGACGTTATTCTACAACGAGTCATCAGACAAGAATTTTCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACACGGTCATGGTCCTATCTTATGGGAAACTGGTGGACTATGACAAGCCTTCAAAGCTTGTGGATACTAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAACTACAATAGGAATTTGCTCCCAAAAGATTAG 3420 0.3912 MFGKHNRYNIVHTYFDSIPLVVVGVCLVFSFLLFFKTTSSSDAICYKWDSAPTLNMSSLSFQTLNVKIMNSHCFSFTGFTDNFSWICLGDFSLTSFSTQRCIIDIVNIFFVSVLYVSLLINLIKKNPASGSSYRKGRVHVVASVCCTLLSIAYFIDSLWNLIAKTTGFSQLNLLVCIVRGLVWISLAVSLSVQGSQWIKILCSIWWLSSCTLVSALNVEILLKKHTFQFFDMAIWPLHILTVLCAFQNHGHFVTQETPDAILCEPLLVHKVMHKQTGLGQASFLSRFTFSWMNALLNLGYSKPLALEDIPSLVSEDKADFAYQKFAHAWDSLLRERGRNNSTNLVLWSIARVYLKENFFIAICTFLRAICAVVSPLLVYSFVNYSSRIEEELKQGMAIVGCLIFAKVVESVSQRHWFFNSRSLGMKTRSALMAAVYQKQLKLSTLGRRRHSTGEIVNYIAADAYRMGEFPWWFHTLLFSALQLFLAVGVLFGVVGLGALPGLVPLLICGFLNVPFAKILQKWRSEFMIAQDERLRSTSEILSSMKIIKLQSWEDNFKNAPLNAGTIFTVLAALRSMEEPVTLIPEALSVLTQVKVSFDRLNTFLLDDEIRRDDIRRTSKQDSCSKSVEILTGNFSWDQQSVPPTLRDVNFEIKWGQTVAVCGPVGAGKTSLLYAILGEIPKISGTVSVSGTLVYVSQTPWIQSGTIRDNILYGKPMDETRYKYTIKVCALDKDIDGFSHGGLTEIGQRGINMSGGQKHRIQLARAVYNDADIYLLDDSFSAVDAHTASILFNDCIKTALRRKTVILVTHQVEFLTTSKAFFSAFTDAIFNAPMFFFDSTPVGRILTRASSDLSILDFDIPFTTIFVSSEVTELLTMIGILVSVTWQVLIVAVLAMVASKYIQGYYQASAREIIRINGTTKAPLMNFTAETSLGVVTIRAFNMADRFFKNYLNLVDTDATMFFHSNAAIEWLILRIEVLQNLTLFTAALLLVLLPKGYVTPALEKCQLKATISSLPNLLDTSVSDEGENWSVGQRQLICLGRVLLKRNRILVLDEATASIDFATDVILQRVIRQEFSECTVITVAHRVPTVIDSDTVMVLSYGKLVDYDKPSKLVDTNSSFSKLVAEYWSNYNRNLLPKD 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3260 1139 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 826 1001 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3260 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 815 IPR027417 -
Ssu4g3260 1139 Gene3D ABC transporter type 1, transmembrane domain 345 559 IPR036640 GO:0005524|GO:0016021
Ssu4g3260 1139 Gene3D - 596 820 IPR027417 -
Ssu4g3260 1139 Gene3D - 947 1134 IPR027417 -
Ssu4g3260 1139 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 358 558 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3260 1139 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 874 1126 IPR003439 GO:0005524
Ssu4g3260 1139 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 132 558 - -
Ssu4g3260 1139 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 1003 1129 - -
Ssu4g3260 1139 Pfam ABC transporter transmembrane region 820 989 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3260 1139 Pfam ABC transporter transmembrane region 359 558 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3260 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1125 IPR027417 -
Ssu4g3260 1139 Pfam ABC transporter 645 778 IPR003439 GO:0005524
Ssu4g3260 1139 SMART AAA_5 654 834 IPR003593 -
Ssu4g3260 1139 SUPERFAMILY ABC transporter transmembrane region 817 993 IPR036640 GO:0005524|GO:0016021
Ssu4g3260 1139 SUPERFAMILY ABC transporter transmembrane region 346 606 IPR036640 GO:0005524|GO:0016021
Ssu4g3260 1139 CDD ABCC_MRP_domain1 627 814 - -
Ssu4g3260 1139 Pfam ABC transporter 1014 1057 IPR003439 GO:0005524
Ssu4g3260 1139 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 132 558 - -
Ssu4g3260 1139 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1003 1129 - -
Ssu4g3260 1139 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 556 815 - -
Ssu4g3260 1139 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 814 1002 - -
Ssu4g3260 1139 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 556 815 - -
Ssu4g3260 1139 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 814 1002 - -
Ssu4g3260 1139 CDD ABC_6TM_ABCC_D1 359 600 IPR044746 GO:0140359
Ssu4g3260 1139 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 609 841 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3260 Ssu-Chr4 82172735 82183618 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3260 566 811 Calmodulin-binding Proteins AT2G36910 29.119 1.35e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3260 - - gmx:100813711 1281.54