Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3259 ATGCTCTTGGTCTGTGCAGGCCTTGTtggactctctctctcttatgcTTTCACCTTGACAGGAGCCCAAATATTTTGGACTCGATGGTATTGCAacttattaaactttattatctCTGTTGAAAGAATCAAGCAATTCATTCACCTACCAGCGGAGCCTCCAGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTAACCTTCAAGCCTTAGAGGCTTTAGAGAAATGTCAGCTTAAGGTAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCCGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCTTGGAAGAGTACTACTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACAGATGCCATTCTACAACGAATAATTAGACAAGAATTTGCAGAGTGCACAGTTATAACTGTGGCTCACAGGGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTGTCCTATGGGAAACTGGTGGAATATGATGAGCCTTCAAGACTAATGGACGCCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAAGAATTCCTCCTCAAATCTTAGCAGGCAGCAACATTGA 669 0.429 MLLVCAGLVGLSLSYAFTLTGAQIFWTRWYCNLLNFIISVERIKQFIHLPAEPPAIVEDNRPPSSWPSKGRINLQALEALEKCQLKVTISRLPNLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSRLMDANSSFSKLVAEYWSSCRKNSSSNLSRQQH 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3259 222 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 77 - -
Ssu4g3259 222 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 5 77 - -
Ssu4g3259 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 203 IPR027417 -
Ssu4g3259 222 Pfam ABC transporter 87 135 IPR003439 GO:0005524
Ssu4g3259 222 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 80 214 - -
Ssu4g3259 222 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 80 214 - -
Ssu4g3259 222 Gene3D - 43 218 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3259 Ssu-Chr4 82151621 82153138 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3259 43 202 Calmodulin-binding Proteins AT2G36910 27.879 1.11e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3259 - - gmx:100784827 271.937