Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3258 ATGGCTTACTCCGGGGATGATTTCTCATGGATTTGTCTGAAGGATTTTGATTTCACTTCTTTCTGTTCTCAAAGGAGCACAATAGACACTATAAATCTACTTTTTGTATGTGTCTTCTACTTGTCCACGATCATCACTCTAATCAGAAAAAGTTCTAGAAGTGGTAGTTCCAGGAAAAGCTGGACTTTCCTTCTTGTCTCTATCGGCTGTGCTATTATCAGCATTGCGTTTTACGGTATTGGCTTGTGGAATCTCATAGCCAAAACTGATAACTCTAATCAGCTGAGCTGGCTAGCTTGCGTTGTCAGAGGATTCATTTGGACTTCTTTGACAGTTTCTTTGCTTGTTCAGAGACACAAATGGATCAAAATTCTGAATTCTGTCTGGTGGGCATGTTCCTGTGTACTGGTTTCAGCTCTCAACATTGAAATTCTTTACAGAAAGCATGAAATAGAGATTTTTGATGTTGTTCAATGGCTCGTACAGTTACTTCTTCTCTTCTGCGCCTTCCAAAATCTTGGTTACTTTGTCACTCAAAGTGTGCCAAAAAGTTTATCTGAGCCACTGTTAGCTCAGGAAGTTGACTCTAAAAAAACAGGACTAGGCCATGCTACCTTTCTCAGCAAGTTGACTTTCTCTTGGGTAAACTCCTTACTCAGTCTGGGTTGCTCAAAGTCACTAGCTCTTGAAGACATCCCTTCCCTACTTTCTGAAGATGAGGCAGACTTGGCCTACCAAAAGTTTACGCATGCATGGGAATCCCTTGTAAGGGAGAGGAGCAAGAACAATACTAAAAACTTGGTTCTTTGGTCTGTTGTTAGAATTCACTTAAAAGATAATGTATTAATAGCTTTTTATGCATTACTCAGGACCATTGCCGTTACTGTTTCTCCTTTAATACTCTATGCTTTTGTAAACTACTCAAATAGCAGGAATACAGATCTTAAAGAAGGTCTTTCCATTGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGAATCTGTGTCCCAGAGACATTGTTTTTTTGATTCCAGGAGGTCTGGCTTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATAAAAAACAGCTAAAGCTTTCAAGCTCAGCAAGGAGAAGGCACTCAACAGGTGAAATTGTGAATTACGTTGCTGTTGATGCGTATCACATGGGAGAATTTCCATGGTGGTTTCACATATCATGGACTTCAGCGTTGCAACTTGTTCTATCTATTGGTATCCTTTTTGGCGTTGCGGGTGTTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTCATCTGTGGACTTATCAATGTTCCATTTGCCAAGATCATACAAAATTGTATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATTAAGTTACAATCCTGGGAGGACAAATTCAAGAATCTGGTTGAGAGCCTACGAGCTAAAGAGTTCATTTGGCTGTCTAAGGCACAGATCATGAAAGCTTATTGGTCATTTCTGTATTGGATGTCTCCTACCATCATCTCTGCTGTTGTTTTCGTCGGTTGTGCTCTTTTCAATAGTGCTCCATTGAATGCTGGAACCATTTTCACAATTCTTGCAACGTTGAGGAACTTGTCAGAACCTGTTCGAATGATCCCAGAGGCTCTATCTATGATGATCCAAGTTAAGGTATCCTTTGATCGTCTCAATACCATTTTGCTTGATGAAGAGCTAGATAGTAGCGATGGTAACACAAGAAATATAAACCAAAGTTCAGTTAATGCGGTGGAAATCCAAGCTGGCAACTTCATTTGGGATCATGAATCAGTGTTCCCAACTTTAAGTGATGTGAATGTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAGTACTAGGAGAGATTCCCAAGATTTCAGGAACTGTTTATGTGTCTGGCACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATAAGAATGCCATTAAAGTTTGTGCTTTAGATAAGGATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAATTAGCTCGTGCAGTCTACAATGATGCTGACATCTATCTCCTTGATGACCCTTTCAGCGCAGTTGATGCTCACACTGCTGCTATTCTGTTCAATGATTGTGTAATGACGACTCTAAGAGAAAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCCTGGTAATGGGAGGTGGAAAAATTACTCAATCAGGCAATTATGAGAATCTCCTGACTGCTGGGACAGCCTTTGAACAACTTGTGAGCGCTCATAAAGAAACAATTTCAGAGTTGGatcaaaacaatgaaaacaaaacTCATACAGAAGAGTCTCAAGCTTTTTACCTCACTAAAAACCAAAGTGAGGGGGAGATTTCTACCGAGGGTCAACTTGGGGTACAACTtacacaagaagaagaaaaagagattgGTGGTGTTGGCTGGAAGATATTCTGGGATTATATTTCCTTTTCCAGGGGTTCATGGATGCTGTGTTGGATCATGTTGTCACaatctttttttattgctttgcAGACTGCATCAACGTTTTGGCTTGCACTAGCCATTGAAGTTCCAAAATTAAGTAGTGCCACCTTGATTGGAGTTTACTCATTAATTTCATTTGCTAGTTCTGCATTTGTCTATCTAAGGTCTTTATTTACTGCACACCTCGGATTAAAAGCTTCTTCAGCCTTCTTCACAAGTTTCACTACTGCTATTTTCAATGCTCCCATGCTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAGCATCTGTGGCAATTGAAATTATGGTGATAATTTGTATAATGGTTTCAGTAACATGGCAAGTTCTCATTGTTGCCATTCCTGCAATCGTTGCATCAAAATATGTTCAGGAATATTATGAAGCTTCTGCAAGGGAATTAATAAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGGGTGGTTACTGTAAGAGCATTTAACATGGTAgacagattttttaaaaattacttaaagcTTGTGGACACAGATGCAACACTGTTCTTTCATTCTAATGTGGCCATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGTTACTTATTCTAGTTCCTCAGGGATATGTGTCCCCAGGTAATATTACATGA 3441 0.3871 MAYSGDDFSWICLKDFDFTSFCSQRSTIDTINLLFVCVFYLSTIITLIRKSSRSGSSRKSWTFLLVSIGCAIISIAFYGIGLWNLIAKTDNSNQLSWLACVVRGFIWTSLTVSLLVQRHKWIKILNSVWWACSCVLVSALNIEILYRKHEIEIFDVVQWLVQLLLLFCAFQNLGYFVTQSVPKSLSEPLLAQEVDSKKTGLGHATFLSKLTFSWVNSLLSLGCSKSLALEDIPSLLSEDEADLAYQKFTHAWESLVRERSKNNTKNLVLWSVVRIHLKDNVLIAFYALLRTIAVTVSPLILYAFVNYSNSRNTDLKEGLSIVGFLILSKVVESVSQRHCFFDSRRSGLKMRSALMVAVYKKQLKLSSSARRRHSTGEIVNYVAVDAYHMGEFPWWFHISWTSALQLVLSIGILFGVAGVGALPGLVPLLICGLINVPFAKIIQNCMAQFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLVESLRAKEFIWLSKAQIMKAYWSFLYWMSPTIISAVVFVGCALFNSAPLNAGTIFTILATLRNLSEPVRMIPEALSMMIQVKVSFDRLNTILLDEELDSSDGNTRNINQSSVNAVEIQAGNFIWDHESVFPTLSDVNVEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVYVSGTIAYVSQTSWIQSGTVRDNILFGKPMDKTRYKNAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTTLREKTVILVTHQVEFLSEVDTILVMGGGKITQSGNYENLLTAGTAFEQLVSAHKETISELDQNNENKTHTEESQAFYLTKNQSEGEISTEGQLGVQLTQEEEKEIGGVGWKIFWDYISFSRGSWMLCWIMLSQSFFIALQTASTFWLALAIEVPKLSSATLIGVYSLISFASSAFVYLRSLFTAHLGLKASSAFFTSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVAIEIMVIICIMVSVTWQVLIVAIPAIVASKYVQEYYEASARELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDATLFFHSNVAMEWLVLRIEALQNLTVITSALLLILVPQGYVSPGNIT 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3258 1146 Pfam ABC transporter transmembrane region 284 543 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3258 1146 Pfam ABC transporter transmembrane region 926 1144 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3258 1146 SUPERFAMILY ABC transporter transmembrane region 269 576 IPR036640 GO:0005524|GO:0016021
Ssu4g3258 1146 SUPERFAMILY ABC transporter transmembrane region 881 1145 IPR036640 GO:0005524|GO:0016021
Ssu4g3258 1146 SMART AAA_5 624 797 IPR003593 -
Ssu4g3258 1146 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 562 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3258 1146 CDD ABC_6TM_ABCC_D2 890 1145 IPR044726 GO:0140359
Ssu4g3258 1146 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 599 820 IPR003439 GO:0005524
Ssu4g3258 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 819 IPR027417 -
Ssu4g3258 1146 CDD ABC_6TM_ABCC_D1 282 570 IPR044746 GO:0140359
Ssu4g3258 1146 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524
Ssu4g3258 1146 Gene3D ABC transporter type 1, transmembrane domain 860 1146 IPR036640 GO:0005524|GO:0016021
Ssu4g3258 1146 Gene3D ABC transporter type 1, transmembrane domain 256 578 IPR036640 GO:0005524|GO:0016021
Ssu4g3258 1146 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 896 1146 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3258 1146 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Ssu4g3258 1146 CDD ABCC_MRP_domain1 597 797 - -
Ssu4g3258 1146 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 48 1144 - -
Ssu4g3258 1146 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 48 1144 - -
Ssu4g3258 1146 Gene3D - 604 851 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3258 Ssu-Chr4 82147281 82151560 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3258 589 854 Calmodulin-binding Proteins AT2G36910 25.589 2.39e-21 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3258 - - gmx:100784827 1938.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3258 4 82147281 82151560 Ssu4g3258 4 82147281 82151560 ECH