Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3256 ATGGGCCAACGTCAATTATTTTGCCTTGGAAGAGTCCTTCTAAAAAGGAATAGAATTCTAGTTCTAGATGAAGCAACTGCGTCCATTGATCCTGCAACAGATGCAATTTTACAAAGAGTCATCAGACAGGAATTCTCTGAATGCACAGTTATAAATGTGGCTCACAGAGTTCCAACTTTAATAGACAGTGACATGGTTATGGTTCTGTCCTATGGTAAACTGGTGGAGTATGATGAACCTTCAAAACTTTTGGAGGCCAAATATTCTTCATTCTCCAAGCTTGTAGCTGAATACTAG 297 0.3906 MGQRQLFCLGRVLLKRNRILVLDEATASIDPATDAILQRVIRQEFSECTVINVAHRVPTLIDSDMVMVLSYGKLVEYDEPSKLLEAKYSSFSKLVAEY 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3256 98 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 96 - -
Ssu4g3256 98 Gene3D - 1 98 IPR027417 -
Ssu4g3256 98 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 1 96 - -
Ssu4g3256 98 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 87 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3256 Ssu-Chr4 82105469 82105955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3256 2 95 Calmodulin-binding Proteins AT2G36910 30.526 2.89e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3256 - - jre:108991293 168.703