Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3254 ATGGTTATCTGGACCATGTTAAGAGTTTTTTTGAAAGAGAATATTTACATAGCAATTAATGCATTAGCAAGGTCTATTTATGCAGCCCTTTCTCCTCTGATAGTCTATGCCTTTGTAAATTATGCAAATCACAATGAAGACAACTTGTACGAGGGTATTTCTATATTAGGGTGGCTGGTTTTTGCCAAATTGGTGGAGTCTGTGTGTGAGAGGCATTGGTACTTTGACTCAAGGAGGTCAGGTATGAGAATGAGATCAGCACTAATGGTGGCTGTCTATGAAAAGCTGTTGAAGCTTTCAAGCTTGGGAAGGAGAAGGCACTCCACTGGGGAGATTGTGAATTACATAGCAGTTGATGCCTACAGGATGGGAGAATTCTTGTGGTGGTTCCACACTGGATGGAGCCTTGCATTGCAAATTTTCTTGGTCATTGCTGTCCTTTTTTGGCTTGTGGGACTTGGTGCTCTTCCTGGTTTAGTTCTTCTTCTCATATTTGGATTCGTCTTCAATCTTCCCTATAAAAAGAAGATTAAAAGTTGCCAGTCACAAGTCCTGATTTCTCAAGATCAGCAACTCAGGTCAACTTCAGAGATCCTGAACAATatcaaacttattaaattacaatCTTGGGAGGATAAGTTTAAGAGCATGGTTGAGTCGCTTTGTGCTAGTGAGTTTAAATGGTTGGCTGAGACACAGTTTGCAAAGGCTTTTGGATCCGTAGTGTTTGTTCTTTCTCCAACCATTATTTGTGCTGTAGTTTTATTAGGATGCACCCTCTTTGGGACTGCTCCATTAAATGCTAGCACGATCTTCACAGTTCTTGCTGCATTGAGAAGCATGGCTGAACCTGTCAGATTCATACCCGAGGCTGTTTCTGTTGTCACACAAGTTAAAGTCTCATTTGACAGGCTAAACACATTTCTCCTTGATGAAGAGCtaaaaaattgtgagaaaaGGAGCATTTCAGTTTCAAAATCAGATAATTGCATTGAAATAGAGGCTGCTAATTTCAGTTGGGATGAGGAATCAGTGACCCCGACTTTGAGAGACATCAACTTAGCCATAAAACGAGGGCAAAAGGTAGCAGTTTGTAGACCAGTTGGAGCTGGCAAGTCTTCTTTATTGCATGCTATACTTGGAGAGATGCCAACAACTTCAGGAATTGTTAATTTGCATGGAGCAGTAGCCTATGTTTCTCAAACTTCTTGGATCCAGTGCGGGACAATTCGGGATAACATATTCTTTGGAAAATCAATGGAAGAAAATCGATATGAGAATGCCATTAAAGCATGCGCTTTGGATAAGGATATAAATGGTTTTAGCCATGCTGATCTCACAGAAATAGGTCAGACAGGGATTAACTTGAGTGGAGGACAGAAGCAGAGGGTTCAACTTGCCCGTGCTGTCTATAATGATGCTGATATATATCTTCTCGATGATCCTTTCAGTGCAGTAGATGCACATACTGCTTCAATTCTATTCCATGACTGTGTCTTAGAGAAAACTGTCATCCTAGTGACTCATCAAGTGGAATTTCTAacaaaagttgataaaattttggtaacaTACTTCTGTTGTAATGTAATGGAGGGTGGGCGTATTACTCAAGCAGGAAGCTATGAGGAGCTGTTAACATCTGGGGCAACCTTTGAATAA 1659 0.3966 MVIWTMLRVFLKENIYIAINALARSIYAALSPLIVYAFVNYANHNEDNLYEGISILGWLVFAKLVESVCERHWYFDSRRSGMRMRSALMVAVYEKLLKLSSLGRRRHSTGEIVNYIAVDAYRMGEFLWWFHTGWSLALQIFLVIAVLFWLVGLGALPGLVLLLIFGFVFNLPYKKKIKSCQSQVLISQDQQLRSTSEILNNIKLIKLQSWEDKFKSMVESLCASEFKWLAETQFAKAFGSVVFVLSPTIICAVVLLGCTLFGTAPLNASTIFTVLAALRSMAEPVRFIPEAVSVVTQVKVSFDRLNTFLLDEELKNCEKRSISVSKSDNCIEIEAANFSWDEESVTPTLRDINLAIKRGQKVAVCRPVGAGKSSLLHAILGEMPTTSGIVNLHGAVAYVSQTSWIQCGTIRDNIFFGKSMEENRYENAIKACALDKDINGFSHADLTEIGQTGINLSGGQKQRVQLARAVYNDADIYLLDDPFSAVDAHTASILFHDCVLEKTVILVTHQVEFLTKVDKILVTYFCCNVMEGGRITQAGSYEELLTSGATFE 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3254 552 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 333 550 IPR003439 GO:0005524
Ssu4g3254 552 Gene3D - 325 552 IPR027417 -
Ssu4g3254 552 Pfam ABC transporter 349 483 IPR003439 GO:0005524
Ssu4g3254 552 SMART AAA_5 358 536 IPR003593 -
Ssu4g3254 552 Pfam ABC transporter transmembrane region 25 278 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3254 552 ProSitePatterns ABC transporters family signature. 456 470 IPR017871 GO:0005524
Ssu4g3254 552 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 552 - -
Ssu4g3254 552 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 21 297 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3254 552 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 5 552 - -
Ssu4g3254 552 SUPERFAMILY ABC transporter transmembrane region 4 309 IPR036640 GO:0005524|GO:0016021
Ssu4g3254 552 CDD ABCC_MRP_domain1 331 534 - -
Ssu4g3254 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 551 IPR027417 -
Ssu4g3254 552 CDD ABC_6TM_ABCC_D1 16 305 IPR044746 GO:0140359
Ssu4g3254 552 Gene3D ABC transporter type 1, transmembrane domain 2 315 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3254 Ssu-Chr4 82101219 82103159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3254 331 548 Calmodulin-binding Proteins AT2G36910 24.681 1.34e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3254 - - qsu:112008820 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3254 4 82101219 82103159 Ssu4g3254 4 82101219 82103159 ECH