Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3251 ATGGCGTCAAGCTCGGCGGCGGAAGGAGTATCAATGGACGATTACGAAGCCCTGATTTCAACGACGGACGTGGAGCTTCTGAAGCGAGCGTGGCGCAACGAGAAGGCAGCCCCCGAGATTCTCCGCTTCGAATCCCATTTGATTTCCCGCCTCAAAGAACAGATTCAACTCATGGAAGAAACTGTGGAAGAGAAATCCAGTGCCGCTACTGACCCTCTTTCAGTGTCTCTCTATCAGATGGACGTGGATAGAACTCTCTTTCTATTAAGATCCTATCTCAGGATCCGCATCCAGAAGATTGAAAAGTACATGTTCCACATCCAAAAGACTGGTGAACTTTGGAACAGGCTATCTAAAGACGAGAAACATTTCACCAAAACGTGCATAGAAGACCTAAAACAACATCTGGAGGAGAGTGTTCTGTCAAAGTTGCCTGAAAATTATCAGTCTGTTCTGAAGCAATCTGTTATAAGTGAAGAGGATGACATGGTACCAGAACCACAACTAGACACATTTGTTTTGTGTAGAAGTAAAGAGTATCTAACGGGCATTCAACTCGAAGATGGACCTGTTGATGACAGGTCGAAGCTGTTTGAGATGGAGCCAGGTGTCCTCCACTTCATATGTTACAAATCAATAAAGGCACTTGTAGAGAGCGGCAAAATTGATCTACTCTGA 678 0.4499 MASSSAAEGVSMDDYEALISTTDVELLKRAWRNEKAAPEILRFESHLISRLKEQIQLMEETVEEKSSAATDPLSVSLYQMDVDRTLFLLRSYLRIRIQKIEKYMFHIQKTGELWNRLSKDEKHFTKTCIEDLKQHLEESVLSKLPENYQSVLKQSVISEEDDMVPEPQLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPGVLHFICYKSIKALVESGKIDLL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3251 225 CDD GINS_A_Sld5 23 141 IPR038749 -
Ssu4g3251 225 Pfam GINS complex protein 54 122 IPR021151 -
Ssu4g3251 225 SUPERFAMILY PriA/YqbF domain 169 225 - -
Ssu4g3251 225 Pfam DNA replication complex GINS protein SLD5 C-terminus 167 225 IPR031633 -
Ssu4g3251 225 SUPERFAMILY GINS helical bundle-like 20 152 IPR036224 -
Ssu4g3251 225 Coils Coil 48 68 - -
Ssu4g3251 225 Gene3D - 11 215 - -
Ssu4g3251 225 PANTHER SLD5 PROTEIN 11 225 IPR008591 GO:0006261
Ssu4g3251 225 PIRSF GINS_Sld5 1 225 IPR008591 GO:0006261
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3251 1 172 Core DNA Replication Machinery Family AT5G49010 62.209 9.52e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3251 K10735 - gmx:100784291 377.481