Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3248 ATGGAGGAAACACCTAAGCTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACCTTTATTTCCCTTCAATtGTTTTTCTCGTTTTCGATGCATATGTACAAATGGGAAGCCTGCCTATGTGACTATAAAGATAGACAACCAGAAGTTTGCAAAAACTAGCCAAGAAAGCAACCGTGTGTGGAACCAAACTTTTCAGATTCAATGTGCTCATCCAGCTGATTCATGCATCACTATTACACTCAAAACATCATGTTCTTCCATATTGGGGAAGTTCCATATCCAGGCTCAGCAGCTATTGAAGAAAGGAGGTTTGATCAACGGCCACTTCCCTCTCCTCATGGATAATGGAAAACCAAACCCAAAACTTAAATTGAAGTTTCAGCTATGGTTCAAGCCAGCAGAATTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAATTTCAAGGGCCGAGGGAGGCTACGTTCCCACAAAGGTCCAATTGTCATGTCAAACTTTATCATGATGCTCACCATTCTTCTGCTTTCCAACCTCCCTTTGATCTATGTGGAGCTCCAAAAAAGCTTTGGGAGGATGTCTATAAAGCCATTGAGGGTGCAaagtatttagtttatattgcGGGGTGGTCCTTCAATCCCATGATGGTTCTGGTTAGAGATCCTCACACAGAAATCCCACATGCAAGAGGAATAAATTTAGGTGAACTATTGAAGAAGAAGGCAGAGGAAGGTGTGGCTGTGAGGGTCATGCTTTGGGATGATGAGACATCTCTGCCCTTTGTTAAGAACAAAGGTGAAATGAACAACCAAGATGAGGAAGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCCAGATTACACCATATGTTCCCCACTCTCTTTGCTCACCATCAGAAGACTATAACAGTGGACACAACAGCACCCAAATCTGTTGGTGACAGAGAACTTATGAGCTTTGTGGGTGGATTAGATTTGTGTGATGGCAGGTATGACACACAGCAACATTCATTGTTTCAAACACTCATCAGGGAATCTCACTGTTATGACTTCTACCAAACAAACATTGAAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGCACCTTGGCATGATGGTCATGCTTGTGTTACCGGTGAGGCTGCTTGGGATGTGCTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTAGTCCCTTCTGGCACCTTGGTAAATCTCATGCCTCGGAGAAACTCAAGCGCTCTTAGTGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTCTCAGTTGGTGAGTTGTCTACAAAGTTAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATATACATTGAAAACCAATATTTCATTGGGGGTTGCCATTGGTGGAAGAAAGATAGGCATTGTGGCTGTACTAATCTAATTCCCATTGAAATTGCACTCAAGGTGGTAAGTAAGATCAAAGCAAAGGAGAGATTTGCTGTGTACATAGTCATACCAATGTGGCCAGAGGGAGAGCCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAGGCAATACAAGAAAGTGGGGAACCAGGACACCCTACAGACTACTTGAATTTCTTCTGTCTTGCAAATAGAGAGCAGAAGGGACAAGGGGAGTATCTTCCACCAGATTCTCCCCAACCTGAAACTCAATACTGGAATGCCCAAAAAAATAGGAGATTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGACCTATACATATTAATTGGATCAGCTAATGTAAACCAAAGATCCCTGGACGGGCAAAGGGACACTGAGATTGCCATAGGATGCTACCAGTCTCAAGATGAAGCTGAGAGCCAAATGAACCTAGATGATATTCAAGCATATAGAATGTCTCTATGGTATGAGCACACCGTTAGTGTTGATGAATTGTTCTTAGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGCGCTCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTAACTTACCCTGTGAGAGTAACACAAGAAGGGTATGTGAAGGACCTCACTGAGGGAGTTCATTTTCCTGATACAAATTCTCTAGTGAGAGGCAAAAGGTCTAAAATATTGCCCCCTATCTTTACCACTTAG 2301 0.4237 MEETPKLLHGTIEATIFNASPYSPLFPFNCFSRFRCICTNGKPAYVTIKIDNQKFAKTSQESNRVWNQTFQIQCAHPADSCITITLKTSCSSILGKFHIQAQQLLKKGGLINGHFPLLMDNGKPNPKLKLKFQLWFKPAELEPSWAKMLSNDWEFQGPREATFPQRSNCHVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIAGWSFNPMMVLVRDPHTEIPHARGINLGELLKKKAEEGVAVRVMLWDDETSLPFVKNKGEMNNQDEEAFAYFNHTKVICRKCPRLHHMFPTLFAHHQKTITVDTTAPKSVGDRELMSFVGGLDLCDGRYDTQQHSLFQTLIRESHCYDFYQTNIEGASLNKGGPRAPWHDGHACVTGEAAWDVLTNFEQRWTKQCDPSFLVPSGTLVNLMPRRNSSALSERNWKVQVYRSIDHVSVGELSTKLTVERSIHEAYVEAIRRAERFIYIENQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESGEPGHPTDYLNFFCLANREQKGQGEYLPPDSPQPETQYWNAQKNRRFMVYVHSKFMIVDDLYILIGSANVNQRSLDGQRDTEIAIGCYQSQDEAESQMNLDDIQAYRMSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWEIYSSEEIVDMEGVHLVTYPVRVTQEGYVKDLTEGVHFPDTNSLVRGKRSKILPPIFTT 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3248 766 Pfam Phospholipase D C terminal 684 755 IPR024632 -
Ssu4g3248 766 Pfam C2 domain 44 117 IPR000008 -
Ssu4g3248 766 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 612 639 IPR001736 GO:0003824
Ssu4g3248 766 SUPERFAMILY Phospholipase D/nuclease 435 694 - -
Ssu4g3248 766 SUPERFAMILY Phospholipase D/nuclease 162 412 - -
Ssu4g3248 766 PANTHER PHOSPHOLIPASE D ALPHA 4 766 - -
Ssu4g3248 766 Pfam PLD-like domain 608 660 IPR025202 -
Ssu4g3248 766 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 304 341 IPR001736 GO:0003824
Ssu4g3248 766 Gene3D Endonuclease Chain A 183 422 - -
Ssu4g3248 766 Gene3D Endonuclease Chain A 423 677 - -
Ssu4g3248 766 PIRSF PLD_plant 1 766 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu4g3248 766 PANTHER PHOSPHOLIPASE D 4 766 IPR015679 -
Ssu4g3248 766 Pfam Phospholipase D Active site motif 305 341 IPR001736 GO:0003824
Ssu4g3248 766 Gene3D C2 domain 38 140 IPR035892 -
Ssu4g3248 766 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 134 IPR035892 -
Ssu4g3248 766 SMART pld_4 612 639 IPR001736 GO:0003824
Ssu4g3248 766 SMART pld_4 304 341 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3248 Ssu-Chr4 82015334 82018744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3248 30 766 Phospholipase D Gene Family (Wang group) AT1G55180 62.032 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3248 K01115 - gmx:100812642 1495.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3248 4 82015334 82018744 Ssu4g3248 4 82015334 82018744 ECH
Ssu8g0288 8 4935580 4938310 Ssu4g3248 4 82015334 82018744 PCT