LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g3245	ATGAGCCGCTACGACAGCCGCTCCGGCGACCCCACTTCCTACCGTGGCCGGAGGAGTGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCAAACAGAAGGGATTATGATGATGGTGGGTCAACGAGGAACTTCAATTTGGATGGTTTACCTCATTTTGAGAAAAACTTCTACATTGAGTCACCAGCAGTAAGGGCAATGACCGATGCCGAGGTTAATGAGTACCAGCAGCGGAGGGAAATAACTGTTGAAGGACGAGATATCCCCAAACCTGTCAAGACCTTTCATGATGCTGGTTTTCCagAATATGTAATGCAAGAAATTACAAAAGCTGGCTTTACTGAACCTACACCCATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCGATTCTAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGAGAACTTGCTGTGCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCAGGAAGGTTAATTGATATGCTTGAGTCAAATCATACCAACTTGCAGAGGGTCACATACCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTACGGAAGATTGTCTCTCAGATCCGTCCAGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCACGGAAGTTCCTTTATAACCCATACAAAGTAATTATAGGCTCTCCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATACGATAAATTGGTCAAGTTGCTAGAGGACATCATGGATGGCAGTCGAATACTGATATTTATGGATACCAAAAAAGGATGTGATCAGATCACCAGGCAACTCCGCATGGATGGCTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAATCAGGCAAAAGTCCTATTATGACCGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGtgaaatatgtaataaattatgACTTCCCGGGGTCACTTGAGGACTATGTTCATCGCATTGGGCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCTAGATTTGCAAAGGAACTTATAGCCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGACTTATGGTTTCTAAAATTCTCCTTTATTCTTGTACAACAATCAATCAGGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGATTGATGAAGCGCAACTGAAGCAGGTTCGAGGGCAACAGAAATTGAACGGCTTCTCCTCGCCGGCGGCGATGGCCACCCATGGCCACGCCGCAGCTCCacctccgccgccgccgccgccgccgccaaaGGAACCGTTTGTTCGGCGCTACAAATTCCTTTGGCCTATGCTTTTGGCTGTGAATCTCGGTGTCGGAGCTTATTTGTTTATGAGGACGAAGAAGAAAGATACTGGCGAGGAGGAGCAAGATGCAAGTCCTGTCGCAACTAAAGATGCTACTGCTCGTGTTGTCGAGACGCCTGTGTCCTCACCACCTATCACAAGTCCTGTGATCAAACGAGAACCAATTCCAGAAAACCAACAACGTGAACTCTTGAAGTGGATACTGGAAGAGAAGAGGAAGGTCAAACCAAAAGATGCAGaggagaaacaaaaaattgatgaagAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAA	2067	0.4465	MSRYDSRSGDPTSYRGRRSDSGLGAPTGFGGSVQHSSSNRRDYDDGGSTRNFNLDGLPHFEKNFYIESPAVRAMTDAEVNEYQQRREITVEGRDIPKPVKTFHDAGFPEYVMQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPPPSDLWFLKFSFILVQQSIRSPRFPRPWEGLWQFSSMELIDEAQLKQVRGQQKLNGFSSPAAMATHGHAAAPPPPPPPPPPKEPFVRRYKFLWPMLLAVNLGVGAYLFMRTKKKDTGEEEQDASPVATKDATARVVETPVSSPPITSPVIKREPIPENQQRELLKWILEEKRKVKPKDAEEKQKIDEEKALLKKLIRSKSIPSV	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g3245	688	Pfam	Helicase conserved C-terminal domain	331	440	IPR001650	-
	Ssu4g3245	688	CDD	SF2_C_DEAD	319	449	-	-
	Ssu4g3245	688	PANTHER	LD32873P	42	529	-	-
	Ssu4g3245	688	SMART	ultradead3	119	322	IPR014001	-
	Ssu4g3245	688	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	42	529	-	-
	Ssu4g3245	688	Gene3D	-	63	309	IPR027417	-
	Ssu4g3245	688	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	334	479	IPR001650	-
	Ssu4g3245	688	Pfam	DEAD/DEAH box helicase	124	295	IPR011545	GO:0003676\|GO:0005524
	Ssu4g3245	688	Gene3D	-	310	480	IPR027417	-
	Ssu4g3245	688	MobiDBLite	consensus disorder prediction	553	567	-	-
	Ssu4g3245	688	MobiDBLite	consensus disorder prediction	1	50	-	-
	Ssu4g3245	688	MobiDBLite	consensus disorder prediction	547	567	-	-
	Ssu4g3245	688	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	100	128	IPR014014	GO:0003724
	Ssu4g3245	688	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	131	306	IPR014001	-
	Ssu4g3245	688	CDD	DEADc_DDX5_DDX17	111	306	-	-
	Ssu4g3245	688	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	252	260	IPR000629	-
	Ssu4g3245	688	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	455	IPR027417	-
	Ssu4g3245	688	SMART	helicmild6	359	440	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g3245	Ssu-Chr4	81970345	81981104	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g3245	87	460	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.867	3.59e-75	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g3245	K12823		-	gmx:100790464	943.725