Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3239 ATGGGACTGCCGCTGATTTTCCTGCTAATTGAGCTACATTTAGTTGTCAGCACTCAGCAGGTTCATGAATATGCAGCCACCAAGCTGCTCCATTCCAATGCCAGAAGCCATTCTAGTATTGCAATCCCACCATCAAAGCCATCTTCTGTATCTTATGGTGTACCTGCTAGTATTGCACTTCCACCTTCCAAGTCAAATCCCAAAGCTCCTACAACCATATGGACACATGGTTTTGTGGATTCTCCAATATCACATCATAAGCATCACCATTCCAAAAGAAAGTCCCACAATCCAACTCCAGCGCCGACCTACCCAGTCCAAGCTCCTACATACAATCATCAAGGTCCTTTAGTCTTCAAATCACAACCTCCTTTCTCGTCACCAAATATTAGGGATATTCATGCCCCTGCACCTGCACCATCACCAGCAATTCTGCCACATCACCTGGATgTACCCTCTTCTTCACCTAGAATTTCTCCTCTAGGTTCATCATTGAGGAGGAAAAAGACTCCACCACCAGCATATCAATTAGTTCTGCCACCTCCACCTCCTAATAAGGATTGCTTGTCAATGACTTGCTCAGAGCCCTTGACATATACACCTCCCGGGTCACCTTGTGGTTGTGTATGGCCGCTTCAGGTTGAACTCTATATCAACATTGCAATATACAAGTTTTTTCCTTTGGTTTCAGAGCTAGCCAAGGAAATTGCAGCAAGTGTTTTGCTGAACCATACCCAGGTTCGCATTGTGGGAGCTGATGCAGCTACTCAGCAACTGGAGAAAACCACTGTTCTCATAGACTTAGTACCCAAAGGAGTAAAATTTGATGATACCActgcatttttaatatataagaaattctGGCACAGGGAGATTCTGATAGATGCTTCAGTCTTTGGTGCTTATGAAGTACTTTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAACTCCCTCAGATGCTTCTGGTATAGATGATGGGCCAAATCCAGGACACGACAACAATGGAATGATGATGAAACCGTTAGGAGTAGATGtcccaaagaagaaaaaagaagggagTAATGGAAGAATGATTGTTTTAATTGTGCTGTCATCAGTTACTgcttttgttttattcattggTCTTGCTTGGCTTTGTCTGCTGAAATGTCGCGCCTATGTTCATGAACAAGAAACAGTTCCAGATAGtttaatttcatcctcttcaaaaCAATCAAGGGCTGCTAGGTCATTGACTCATGGCATCAGGCTAGGTTCTGGATCACAGTCCTTCAATTCTGGAACAATAACATATACAGGGTCTGCTAAGATTTTTACTTTGAATGACTTAGAAAAAGCAACAAATAACTTTGATTCTTCAAGGATATTAGGAGAAGGTGGCTTTGGACTTGTTTACAAAGGTATTCTAAATGATGGGAGGGATGTAGCCGTGAAGATTCTCAAAAGAGATGATCAGCGTGGTGGCCGTGAATTCCTGGCAGAAGTTGAGATGCTCAGCCGCCTACACCATAGAAATTTAGTTAAATTGATAGGTATATGCATAGAGAAACAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGAAGCGTGGAATCCCACTTACATGGAGCTGACAAGGAAACTGATCCACTGGATTGGAATGCCCGGATGAAGATTGCTCTTGGTGCAGCTCGAGGATTGGCCTATCTTCATGAAGATTCAAACCCATGTGTCATACATCGGGACTTCAAGGCCAGCAACATCTTGTTGGAGCACGATTTTACACCTAAGGTCTCAGATTTTGGATTGGCTAGAACAGCACTCGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACTTTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGATGTTTACAGTTATGGAGTTGTACTCCTTGAGCTCCTAACTGGAAGAAAGCCTGTGGATTTGTCACAACCACCAGGTCAAGAAAATCTTGTGACATGGGTTCGTCCACTTCTCACAAGTAAGGAGGGTTTGCAGATGATCATAGACCCAGTTGTCAAGCCTAATATCTCTATGGATACTGTGGTAAAAGTTGCAGCAATTGCATCCATGTGTGTACAACCAGAAGTCTCTCAACGTCCTTTCATGGGAGAAGTTGTTCAGGCCTTGAAGTTGGTATGCAGTGAGTTTGAGGAAACAGACTATATAAGATCAAGGAGTTTTCAAGAGGGTATTCTAACTGATGTGGAAGGAAAGTTTTCTGAAGCTTCAGGTGAAAGAGTGGAATTTTCAGAGTATCAAAAAACTCTTTCTGGCTATCGATCTGGTGAGGAAAAGGTATCATTATCAGCATCAGAGTTGCTCAGTACTTCAGGTCAGGAATTTGAGTCATTCAGGAGGTATTCTCGTTCAGGGCCTCTAACTATTGGGAAGAAGAGACAGTTCTGGCAGAAGTTGAGAAGTTTGTCTAGAGGTAGCACCAGTGAACATGGATTTTCAACTAAACTATGGCCTGGATCCCATTAA 2535 0.4178 MGLPLIFLLIELHLVVSTQQVHEYAATKLLHSNARSHSSIAIPPSKPSSVSYGVPASIALPPSKSNPKAPTTIWTHGFVDSPISHHKHHHSKRKSHNPTPAPTYPVQAPTYNHQGPLVFKSQPPFSSPNIRDIHAPAPAPSPAILPHHLDVPSSSPRISPLGSSLRRKKTPPPAYQLVLPPPPPNKDCLSMTCSEPLTYTPPGSPCGCVWPLQVELYINIAIYKFFPLVSELAKEIAASVLLNHTQVRIVGADAATQQLEKTTVLIDLVPKGVKFDDTTAFLIYKKFWHREILIDASVFGAYEVLYVHYPGLPPSPPSTPSDASGIDDGPNPGHDNNGMMMKPLGVDVPKKKKEGSNGRMIVLIVLSSVTAFVLFIGLAWLCLLKCRAYVHEQETVPDSLISSSSKQSRAARSLTHGIRLGSGSQSFNSGTITYTGSAKIFTLNDLEKATNNFDSSRILGEGGFGLVYKGILNDGRDVAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLVYELVPNGSVESHLHGADKETDPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKASNILLEHDFTPKVSDFGLARTALDERNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLQMIIDPVVKPNISMDTVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEFEETDYIRSRSFQEGILTDVEGKFSEASGERVEFSEYQKTLSGYRSGEEKVSLSASELLSTSGQEFESFRRYSRSGPLTIGKKRQFWQKLRSLSRGSTSEHGFSTKLWPGSH 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3239 844 PANTHER OS01G0750732 PROTEIN 20 843 - -
Ssu4g3239 844 CDD STKc_IRAK 459 727 - -
Ssu4g3239 844 MobiDBLite consensus disorder prediction 81 102 - -
Ssu4g3239 844 ProSiteProfiles Protein kinase domain profile. 453 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3239 844 Gene3D Phosphorylase Kinase; domain 1 426 528 - -
Ssu4g3239 844 MobiDBLite consensus disorder prediction 155 181 - -
Ssu4g3239 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Ssu4g3239 844 Gene3D Transferase(Phosphotransferase) domain 1 529 747 - -
Ssu4g3239 844 Pfam Protein tyrosine and serine/threonine kinase 456 726 IPR001245 GO:0004672|GO:0006468
Ssu4g3239 844 PANTHER OS01G0750732 PROTEIN 20 843 - -
Ssu4g3239 844 MobiDBLite consensus disorder prediction 316 342 - -
Ssu4g3239 844 SUPERFAMILY Protein kinase-like (PK-like) 432 726 IPR011009 -
Ssu4g3239 844 ProSitePatterns Protein kinases ATP-binding region signature. 459 481 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3239 Ssu-Chr4 81857757 81863000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3239 185 839 Receptor kinase-like Gene Family AT5G56890 60.725 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Ssu4g3239 PK_Tyr_Ser-Thr 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3239 - - gmx:100814040 1469.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0303 8 5129171 5135180 Ssu4g3239 4 81857757 81863000 PCT