Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3235 ATGCAGCCGAAATCTCACACCCCTTTTTTTGTTCCCCCCCAAAAAGCcatgaacaacaacaacactaaCAGAATCTCAACAACAAGAAATGGCAACAGCACCACCCAGGCCTGCGCTGCTTGCAAGTACCAACGCAGGAAGTGCGCTCCTGACTGCATTCTCGCACCTTACTTCCCTCACGATCGCCAACGCCAATTCCTCAACGCCCATAAATTATTCGGCGTCAGCAACATCACCAAAATCATCAAGTTCCTTAGCCCTCACGACAAGGACCAAGCCATGCGCACCATCATCTACCAATCCGACATGCGCGCCACGGACCCTGTCGGCGGTTGCTATAGGTACATTCTCGACCTCCAGGCCCAGATCGAGTACTACCGGGCCGAACTCGAACTCGTCCTCCAGCAACTCGCCATTTTCAGAGCCCAggcccaccaccaccaccaccaccaccaccaacaacaacacGGTATCTATGCTCCGACGGGAAACAACGTTAACGTCGCCGTCAACGGCGACGGTGAGGTTTTGAACGCTGATCCGTTGGGCTTGTATAACCAGCAGCCACATTATCAGTGTCTGCAGCCACAGCAGGAGCAGTACGTTATGGTGCATGAAAATGGTCATAGCAGCCAAAACAGCAACGCCACCCCTTTGCAGGAACACATCAACACGTGGGCTGTGCAGCACACTGCTGTGTCCCTTTCTTCGTTGTCCTTGCAAGGGCAGAGTAGTAATGTTAGCGATGAGTATGATCACAAGCCGCTGGGGATTGACATAGATTCTGATGAGAGAAGCGAGTTAGGGTTCGAGCCTGAAGAATTAGTCCATCGCAGTGATGAAGCAGTCTTGTTTAAGATAGACGATGCAGTAATAAAAGCTGAGGCTGACTGCATCCAACAAGCTCAAGACCATGATCTGAAAGGTGCAGCAACTTCGTTTACTCTCACAAATTGTACTTGCTGA 966 0.4783 MQPKSHTPFFVPPQKAMNNNNTNRISTTRNGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKFLSPHDKDQAMRTIIYQSDMRATDPVGGCYRYILDLQAQIEYYRAELELVLQQLAIFRAQAHHHHHHHHQQQHGIYAPTGNNVNVAVNGDGEVLNADPLGLYNQQPHYQCLQPQQEQYVMVHENGHSSQNSNATPLQEHINTWAVQHTAVSLSSLSLQGQSSNVSDEYDHKPLGIDIDSDERSELGFEPEELVHRSDEAVLFKIDDAVIKAEADCIQQAQDHDLKGAATSFTLTNCTC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3235 321 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 31 253 - -
Ssu4g3235 321 Pfam Lateral organ boundaries (LOB) domain 37 132 IPR004883 -
Ssu4g3235 321 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 253 - -
Ssu4g3235 321 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Ssu4g3235 321 MobiDBLite consensus disorder prediction 12 29 - -
Ssu4g3235 321 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3235 Ssu-Chr4 81690933 81692598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3235 36 274 AS2 family AT3G13850 50.000 2.42e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu4g3235 LOB 4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3235 - - pvu:PHAVU_010G138500g 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3235 4 81690933 81692598 Ssu4g3235 4 81690933 81692598 ECH
Ssu8g0308 8 5167398 5167988 Ssu4g3235 4 81690933 81692598 PCT