Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3232 ATGGAGATGAAGGGTTTTGTGTTCCACCAACAACAGCAGCAACCAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCGTCCGGTGAAGCTAGTGCTTCCTCAGGCAACAGAACTGAAATCGGAACCAGTTACCCTCAACAATACTTGGCTCCACCACCAACTCAGACTCAACcagcaaagaaaaagagaaaccTCCCTGGAAACCCAgACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTTGCCACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGAACAGAACCTTCAACTGCATAGAAGAGGGCATAATTTGCCATGGAAACTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGCCCACTTGTGTGCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCAGTTCAATCGGATTGGAAAGCCCACTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCCATCACTGGAGGCACAGCCAATAACCCGCTTCTTCCCCCACAACCTTCTTCCTCTCGCCACCACCACATGAACCTCCAAACCCAATTCAACCCCCAAGACCTGCATGCCTTCCCATTGAAAAAAGAGCAGCAAAGTTTCAATGTTAGGCAAGAAATACCCCCTTGGCTTGGCCCACCAACAGCATTTGATCATCTCTCCTCATCCTCATCCATGGTCttctctcctcctcctcctccacaCCAAGAAAAccctaaccctagccttggtcCCACTCTTGCTGCTTACCAAACAGTTCCCAACCCTTCCCCATACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGACAAGGACCCACCATCAGGCTCACGTGTCTTCTTCTGCTGATTCTGGCGCTGCTCATTTTGGCTTGAACTTGTCCTCACGTGaagacaccaccaccaccacttcaACAACAACCACTGCTACTACTAATACTGCTACAGTGTTTAGCCATGGCTTATTATCGTCACCTCTGGGGAATAAAGCTGCTGTGTCTTCTGCTCCATCCCTTCTTCATGATGTTATCTACTCTTTCTCTTCCCCTTCTGCCTTTGAAGGAACCCCTTTTGAGGATGCGTTTGGTGGCATTCAGAGTTCAAAGAAAGATGATGAGGATCACTTGTATCTGCATGACACCTTCTCAAAAACAACTGGTGCAGCTGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCATACTGATATTCTCACCATTGCTGGCATTGGAAACTGCATCCATGATCAACAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1551 0.4539 MEMKGFVFHQQQQQPVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLAPPPTQTQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGGTANNPLLPPQPSSSRHHHMNLQTQFNPQDLHAFPLKKEQQSFNVRQEIPPWLGPPTAFDHLSSSSSMVFSPPPPPHQENPNPSLGPTLAAYQTVPNPSPYMSATALLQKAAQMGATMSRSGSSPAMTRTHHQAHVSSSADSGAAHFGLNLSSREDTTTTTSTTTTATTNTATVFSHGLLSSPLGNKAAVSSAPSLLHDVIYSFSSPSAFEGTPFEDAFGGIQSSKKDDEDHLYLHDTFSKTTGAAGNEGLTRDFLGLRPLSHTDILTIAGIGNCIHDQQNQSQKPWQG 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3232 516 MobiDBLite consensus disorder prediction 1 72 - -
Ssu4g3232 516 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 23 501 - -
Ssu4g3232 516 MobiDBLite consensus disorder prediction 364 391 - -
Ssu4g3232 516 Gene3D Classic Zinc Finger 71 137 - -
Ssu4g3232 516 Gene3D Classic Zinc Finger 144 223 - -
Ssu4g3232 516 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Ssu4g3232 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Ssu4g3232 516 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Ssu4g3232 516 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Ssu4g3232 516 SMART c2h2final6 166 186 IPR013087 -
Ssu4g3232 516 SMART c2h2final6 131 161 IPR013087 -
Ssu4g3232 516 SMART c2h2final6 90 112 IPR013087 -
Ssu4g3232 516 MobiDBLite consensus disorder prediction 290 310 - -
Ssu4g3232 516 MobiDBLite consensus disorder prediction 7 63 - -
Ssu4g3232 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3232 Ssu-Chr4 81661620 81663760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3232 21 516 IDZ Gene Family AT3G13810 47.943 1.32e-139 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g3232 zf-C2H2_jaz 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3232 K25870 - gmx:100808344 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0310 8 5209605 5211835 Ssu4g3232 4 81661620 81663760 PCT