Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3221 atgGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTATGGTCAcctgaagaagatgaaaaactcATCAACTACATCACAACTTATGGACATGGTTGCTGGAGCTCTGTCCCAAAACTTgcagGCCTTCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGGCCTGACTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCAGCTCTCATTATCGAACTCCACAGCATTTTAGGCAACAGGTGGGCTCAGATAGCCAGGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTACTTTCTCATGATGTTATTCCTCCTTTAGCCACATTTTCTGATTTTCACAGCCCCTGCAATATTGGTTCCATGGAAAGTTTATTCCCTTTAACTGCAAACCCTAATGTGATCCTAAACTTTCATCATCACCAGGACCAGCTCTACCTTCCCGCCACACCATCCCCAGCCCTACAAGGTTTTGatcataataatgatattaagaCAGACATTAACAATTATAATCCCAATTTCCATCATATTCAGAATCCAATACCAGAAACAGTGTTACCATCTTCTAATCCATCCTCTTATGAAGATACATGGTCATTGGGTTGTGTAGCTCTACATCTCAATCCAAATCAAGAAAATCAAATTACCAAAAGTGATACCACCTCACATTATGTTGTTGACAAATTCACCAACCCAACTGCATTGCAGCAATATGAATGTCACTTAGTAGAACCCCTTGTGCCAAAAGTCAGTGAGAGCATTGAGGATTATGTTTGTAGCATGCCATACTCATCTGCTTCCCAGGAACAACATGAGGCTACAGAAAAATTTCAGTGTTATCCACAAGATCTAACTGAAGCAGCCAATCAATTAGAGTACATTGATGCCCTCATGTCATCACTGCCATCTTCAACAACTTCATCATCGGTGTCAAGTAGTCAAATAGTTACAAACCCTATTATTCCTTCAGGATGGGAGCCTTGA 1041 0.3939 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEVKNFWNSSIKKKLLSHDVIPPLATFSDFHSPCNIGSMESLFPLTANPNVILNFHHHQDQLYLPATPSPALQGFDHNNDIKTDINNYNPNFHHIQNPIPETVLPSSNPSSYEDTWSLGCVALHLNPNQENQITKSDTTSHYVVDKFTNPTALQQYECHLVEPLVPKVSESIEDYVCSMPYSSASQEQHEATEKFQCYPQDLTEAANQLEYIDALMSSLPSSTTSSSVSSSQIVTNPIIPSGWEP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3221 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu4g3221 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu4g3221 346 Gene3D - 69 116 - -
Ssu4g3221 346 CDD SANT 17 61 IPR001005 -
Ssu4g3221 346 SMART sant 66 114 IPR001005 -
Ssu4g3221 346 SMART sant 13 63 IPR001005 -
Ssu4g3221 346 PANTHER TRANSCRIPTION FACTOR MYB26 2 340 - -
Ssu4g3221 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu4g3221 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu4g3221 346 CDD SANT 69 109 IPR001005 -
Ssu4g3221 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu4g3221 346 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Ssu4g3221 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu4g3221 346 PANTHER MYB DOMAIN PROTEIN 55 2 340 - -
Ssu4g3221 346 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3221 Ssu-Chr4 81523698 81524993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3221 1 230 MYB Transcription Factor Family AT3G13890 60.086 1.34e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g3221 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3221 K09422 - gmx:100785147 601.668