Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3220 ATGGGTGGTTCAGGACGATGGCTTAAGTCGCTTATTTCTCTCAGAAGGCCCTCACCAACTGATCAAGAGAAGGGTGGTGATAAGAGTAAGAGAAAATGGAAGTTATGGAGGAGCAGTTCAGAAGGGTTTGGGATTGGATGCTCCGTGAAGAAGGAGCAGAGTGGTGTTGGTGCTTCCTTTGTGGTGGATGATGGAGCATTTGCTGCTGCTTTGGCTGCTGTGGTGAGAACTCCACTCAAAGACTTCATGGTGATCAAGCAGGAATGGGCTGCCATTCGAATCCAGGCACTGTTTCGAGGGTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTGAGGTTGCAAGCCATATTTCGTGGTTGGCAAGTGAGAAAGCAAGCAGCTGTTACTCTAAGGTGTATGCAGGCTCTTGTGCGAGTTCAAGCTCATGTCAAGGCAAGGAATGTGAGGAAGTTTCCAGAAGGGAAAGCTGGGCATTGCAATGAAGCTGATCCTGTTAAGCAGGCTGAGCAAGGGTGGTGTGACATTACAGGAACTGTGGAAGAAGTTAAAGCAAAATTACAAATGAGGCAGGAAGGAGCCATTAAGAGGGATAGAACAAAGGCATACACTCAGTCTAAGCAGAAATCAACGGTGCGTGCTAGTCCAAACTCAAGAGCTGCTAAGCCTGTGACTCCTCTCAAGCACCGCAGCCTAGACAGCAAGAGGTCGGGATGGAGCATGTTAGAACGCTGGATGGCTGCAAAGCCATGGGAGAGCAGGTCAATGGAAGAGATGTATTTGGATTCACCTGACAGGACTCCAGTGACCAGTAAAAGTGATCATCTTGTTCTTCCCCTTAATTCAGATAAACAAATTGGCTCAGTCAAAGCAAGAAGGAATGGTGTGACAACCAGGATTTCATCTAAATCTCTTACAACTAGTCAATCAACTCCATCATCTTCAGCCATAAGCTCTGAATGCATGTATGATGATAGCCCTTTGTCAACTTCATGCACATCTGGATCACCACCTCTACCATCTACCAACAATGTTATGGTGGAAGCAACAGAGGAAAGAAATGTTTGTAAACCAAGCTACATGAATCTAACAGCATCAACCAAAGCCAAACTGAAACCCTATAGGTGTTTTTCTCAGAATTCGAAGAGAATCTTTATGGATGATTGTGTGTCACTAAGTGGAGTTACTAGAAGCAGTTCTGGTTCCTATCCTTCTGCTAATATGTGGAAGAATCTCTATGCAACACCTCTAAGAACAAGTTATCAAAAACGATATACACTGGAAGATAAGTAG 1299 0.4542 MGGSGRWLKSLISLRRPSPTDQEKGGDKSKRKWKLWRSSSEGFGIGCSVKKEQSGVGASFVVDDGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQALFRGFLARRALRALRAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQAHVKARNVRKFPEGKAGHCNEADPVKQAEQGWCDITGTVEEVKAKLQMRQEGAIKRDRTKAYTQSKQKSTVRASPNSRAAKPVTPLKHRSLDSKRSGWSMLERWMAAKPWESRSMEEMYLDSPDRTPVTSKSDHLVLPLNSDKQIGSVKARRNGVTTRISSKSLTTSQSTPSSSAISSECMYDDSPLSTSCTSGSPPLPSTNNVMVEATEERNVCKPSYMNLTASTKAKLKPYRCFSQNSKRIFMDDCVSLSGVTRSSSGSYPSANMWKNLYATPLRTSYQKRYTLEDK 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3220 432 Gene3D - 85 138 - -
Ssu4g3220 432 Pfam IQ calmodulin-binding motif 89 108 IPR000048 GO:0005515
Ssu4g3220 432 Pfam IQ calmodulin-binding motif 111 128 IPR000048 GO:0005515
Ssu4g3220 432 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 431 - -
Ssu4g3220 432 PANTHER IQ-DOMAIN 5-RELATED 1 431 - -
Ssu4g3220 432 MobiDBLite consensus disorder prediction 293 321 - -
Ssu4g3220 432 ProSiteProfiles IQ motif profile. 87 115 IPR000048 GO:0005515
Ssu4g3220 432 ProSiteProfiles IQ motif profile. 111 138 IPR000048 GO:0005515
Ssu4g3220 432 SMART iq_5 86 108 IPR000048 GO:0005515
Ssu4g3220 432 SMART iq_5 109 130 IPR000048 GO:0005515
Ssu4g3220 432 MobiDBLite consensus disorder prediction 196 234 - -
Ssu4g3220 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 129 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3220 Ssu-Chr4 81506836 81509161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3220 1 415 IQD Protein Family AT1G72670 43.519 6.21e-87 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3220 - - gmx:100784093 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0320 8 5332268 5334306 Ssu4g3220 4 81506836 81509161 PCT