Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3212 ATGTTACGTGCAGAAGTGATGAACTTAGAGTATTTCTCTGTTACTGGATATGCAGTGGATTTCTCATGGACTTGTCTGAGACATTTTGATTTCACTTCTTTGTGCTCCCAGAGGAGCATAATAGACATTTTTAAACTACTTTTCATCGGTGTCTTCTACATGTCTTTGCTTATTACTTTAATCAGAAGACGTTCTGCATGTGGTAGCCACAGAAAGAACTGGGTTTTCTCAGTTGTCTCTGTCTGTTGTGCTCTTATTAGCATTGCACATTTAAGCAATGGCTTGAAGTTGTGGAATCAGCAGAGCTGGTTAGCTTGTATTTTCAGAGCATTTGTGTGGCTTTCGTTTACAGTTTCATTACATGTTCAGAGATACAAATGGATCAAAATTCTGAGCTCTATCTGGTGGGCATCTTCCTGTGTATTGGCTTCAGCTCTCAACATTGAAATTATGTTCAAAGAGCATGCAGTTGAGGTCTTTGAAATGGTACAATGGCTTGTAcatttcttacttttcttttgtgcCTTCCAAAATCTCGGTTGTTTTGTCACATCCCAGCATATCAAAGATACTACAACTTTATCTGAGCCTCTGATAGCTCAGAGAGTTGAAACTACACAAACACGACTAGGCCATGCTACCCTTATCAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTCAGACTGGGTTACTCAAAGCCACTAGCTCTTGAAGATATTCCATTTCTTCTTTCCGAAGATAAAGCAGCCTCGGCCTACCAAGACCTTGCGCAAGCATGGGAATCCCTTGTAAGGGAGAGCAGCAATAACAACACCAAAAACTCGGTTCTTTGGTCTGTAGTAAGAACTTTCTCAAAGGAGAAcatattaatagcattttatgCATTACTCAGAAGTATTTGCATGATAGTTTCTCCTCTAATACTCTATGCTTTTGTGAACTACTCAAATAGCAGTGAGGCAGATCTAAAAGTAGGTTTTTCCATGCTGGGTTTTCTGATTCTCACCAAAGTGGTTGAGTCGATGTCCCAGAGACATTACTGTTTTGGCTCCAGGAGGTCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAGTGTATCAGAAACTGCTAAAGCTTTCCAGCTCAGCAAGGAAAAGGCACTCAACTGGAGAAGTTGTGAATTACATTGCAGTTGATGCATATCGATTGGGAGAATTTCCATGGTGGTTTCATGTAACATGGACTTCTGTAGTGCAACTTGTTTTGTCTATTGTTCTCCTTTTTTGTGTGGTGGGCGCTGGTGCTCTTCCAGGTTTAGTCCCTCTTCTCATCTGTGGACTTCTCAATGTGCCATTTGCAAAGATCATACAAAATTCTCAGTCACAATTCATGATGGCACAAGACGAGCGGCTCAGATCAACTTCAGAAATTCTAAACAGTATGAAAATCATCAAGTTACAATCCTGGGAGGATAAATTCAAGAACATAGTTTTGTCCCTACGTGCTAAAGAAATCATATGGTTGTCTAAGGCGCAGATCATAAAAGCTTATGGGTCATTTCTGTATTGGATGGTTCCAACCATTGTTCCTTCTAGCTGTGTCATGACTACTCTAAGAGAGAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATCAGATCCTGGTAATGGAGGGTGGAAAAATTACTCAATCAGGTAGTTATGAAGATCTCCTGACAGCTGGCACTGCCTTTGAGCAACTTGTCAGTGCCCATAAAGCTGCATTAACTGAATTGGATcaagaaagtgaaaataatagAGATTCTGATATTGAGGTTATGATACATCCAGAAGAGTTTAAAAATCAAAGAGAGGGGGTGATTTCTACCAAGGGTCAACTTGGGGTACAGCTTACacaggaagaagaaaaagaaattggtgATGTTGGGTGGAAGCCATTCTGggattatatttcattttccaGGGGTTCATTCTTGCTGTGTTTAACCATGTCAGCACAATTTGCTTTTATTGCTTTGCAGACTGCATCAACCTATTGGCTTGCTCTAGCCAGTGAAATCCTAAAAGTAACTAGTGTCACATTTATTGGAGTATACTCATTATTTTCACTTGTTagtattgtatttatatatataaggtctGTCTTGGCTGCTAATCTTGGATTGAAAGCTTCTAAAGCCTTCTTCTCAAGTTTCACTTCGGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTGAGTATTGTGGACCTTGATATTCCTTATACTCTCTTTTTAGTAGCATTTGTAGTAGCTGAAATTCTGGTGACAATATGTGTGATGGCTTCAGTCACATGGCAAGTTCTTATTGTTGCTGTTCCTGCTATGGTGGCATCAATATATATTCAGgtATATTATCAAGCCTCTGCAAGGGAATTGATGAGGATAAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCTGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTGAACACGGTGAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATGGATGCAACATTGTTCTTCCATTCTAATGTGGCCATGGAATGGTCAATTTTGAGGATTGAAGTACTTCAAAATTTGACAGTCTTCACTGCAGCTTTATTACTTATTCTACTTCCCAAGGGATATGTACCTTCagGTCTTGTgggattttctctttcttatgcGTTCACATTGAAAGAATCCCTAGTATTTTGGAGTCGAATGTTTAGCATGTTATCAAACCATATCATATCCGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAGCCTCCTGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATAGATCTTCGAGCCCTAGAGGCTTTAGAGAAATGTCAGCTAAAGGAAACAATCAGCAAGCTACCAGGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAGCGTCAACTGTTTTGTCTTGGAAGAGTCCTACTTAAGAGGAACAGAATACTTGTTCTAGATGAAGCTACTGCATCCATTGACTCTGCAACAGATGCTATTCTACAACAAGTGATTAGACAAGAATTTGCAGAATGCACGGTCATAACCGTGGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTAGTGGAATATGATGAGCCTTCAAAACTTATGGGGATCAACTCCATGTTCTCTAAGTTGGTCGCTGAATATTGGTCGAGCTGCAGTAAGAACTCCTCCCTCCCAAATATTACCAGGCAGCAACATTGA 3378 0.3887 MLRAEVMNLEYFSVTGYAVDFSWTCLRHFDFTSLCSQRSIIDIFKLLFIGVFYMSLLITLIRRRSACGSHRKNWVFSVVSVCCALISIAHLSNGLKLWNQQSWLACIFRAFVWLSFTVSLHVQRYKWIKILSSIWWASSCVLASALNIEIMFKEHAVEVFEMVQWLVHFLLFFCAFQNLGCFVTSQHIKDTTTLSEPLIAQRVETTQTRLGHATLISKLTFSWVNSLLRLGYSKPLALEDIPFLLSEDKAASAYQDLAQAWESLVRESSNNNTKNSVLWSVVRTFSKENILIAFYALLRSICMIVSPLILYAFVNYSNSSEADLKVGFSMLGFLILTKVVESMSQRHYCFGSRRSGMKIRSALMVAVYQKLLKLSSSARKRHSTGEVVNYIAVDAYRLGEFPWWFHVTWTSVVQLVLSIVLLFCVVGAGALPGLVPLLICGLLNVPFAKIIQNSQSQFMMAQDERLRSTSEILNSMKIIKLQSWEDKFKNIVLSLRAKEIIWLSKAQIIKAYGSFLYWMVPTIVPSSCVMTTLREKTVILVTHQVEFLSEVDQILVMEGGKITQSGSYEDLLTAGTAFEQLVSAHKAALTELDQESENNRDSDIEVMIHPEEFKNQREGVISTKGQLGVQLTQEEEKEIGDVGWKPFWDYISFSRGSFLLCLTMSAQFAFIALQTASTYWLALASEILKVTSVTFIGVYSLFSLVSIVFIYIRSVLAANLGLKASKAFFSSFTSAIFNAPMLFFDSTPVGRILTRASSDLSIVDLDIPYTLFLVAFVVAEILVTICVMASVTWQVLIVAVPAMVASIYIQVYYQASARELMRINGTTKAPVMNFAAETSLGVVTVRALNTVNRFFNNYLKLVDMDATLFFHSNVAMEWSILRIEVLQNLTVFTAALLLILLPKGYVPSGLVGFSLSYAFTLKESLVFWSRMFSMLSNHIISVERIKQFIHIPAEPPAIVEDNRPPSSWPSKGRIDLRALEALEKCQLKETISKLPGLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMGINSMFSKLVAEYWSSCSKNSSLPNITRQQH 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3212 1125 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 527 978 - -
Ssu4g3212 1125 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 982 1116 - -
Ssu4g3212 1125 SUPERFAMILY ABC transporter transmembrane region 278 525 IPR036640 GO:0005524|GO:0016021
Ssu4g3212 1125 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 662 937 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3212 1125 Pfam ABC transporter 976 1037 IPR003439 GO:0005524
Ssu4g3212 1125 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 98 526 - -
Ssu4g3212 1125 SUPERFAMILY ABC transporter transmembrane region 645 956 IPR036640 GO:0005524|GO:0016021
Ssu4g3212 1125 Gene3D - 951 1117 IPR027417 -
Ssu4g3212 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1105 IPR027417 -
Ssu4g3212 1125 Pfam ABC transporter transmembrane region 691 918 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3212 1125 Pfam ABC transporter transmembrane region 290 524 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3212 1125 CDD ABC_6TM_ABCC_D2 656 949 IPR044726 GO:0140359
Ssu4g3212 1125 CDD ABC_6TM_ABCC_D1 291 531 IPR044746 GO:0140359
Ssu4g3212 1125 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 982 1116 - -
Ssu4g3212 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 583 IPR027417 -
Ssu4g3212 1125 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 524 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3212 1125 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 98 526 - -
Ssu4g3212 1125 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 527 978 - -
Ssu4g3212 1125 Gene3D ABC transporter type 1, transmembrane domain 250 565 IPR036640 GO:0005524|GO:0016021
Ssu4g3212 1125 Gene3D ABC transporter type 1, transmembrane domain 625 950 IPR036640 GO:0005524|GO:0016021
Ssu4g3212 1125 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 859 1106 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3212 Ssu-Chr4 81379803 81385794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3212 972 1123 Calmodulin-binding Proteins AT2G36910 30.488 5.82e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3212 - - ccaj:109794339 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3212 4 81379803 81385794 Ssu4g3212 4 81379803 81385794 ECH