Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3208 ATGACGCGGGGGAGGATAAGGGCAAGGCTCCGGAGGAGCCATTTTTACACATTTGGTTGCCTTAGGCCTTCTACCACTGAGGAGGCACCTCATCCACTTCAAGGTCCCGGTTTTTCACGAACCGTGTATTGCAATCAGCCTCTACTCCATGAAAAGAGGCCTCTATATTACTGCAAGAATGATATATCCACCACCAAGTACAATGTTGTTACGTTTTTCCCCAAGGCACTCTTTGAGCAATTTCGTAGGGTTGCTAATATATACTTCCTTTTGGCTGCGTGTCTCTCAGCCTCGCCAATTTCGCCTTTCAGCCCACTGAGCATGATTGCTCCTTTGGCATTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAAGATTCACGAAGGTTTGTTCAGGATGTCAAAGTTAATCACCGGAAGGTTAATCGCCATAAAGGCGATGGTGTTTTTGGTCCCAGGTCGTGGCAGAACATTATGGTTGGGGATGTGGTAAAGGTGAACAAGGATCAGTTCTTTCCAGCTGATTTGCTTCTCTTGTCATCAAGTTATGAGGATGGGATATGCTATGTAGAGACtatgaatttggatggtgaGACCAACTTGAAGGTGAAAAGATCTTTGGAGGCTACCTTGACTCTGGATAATGATGAGGTTTTTAAAGATTTCACAGGAACAATTCGTTGTGAAGACCCAAACCCCAATCTTTATACTTTTGTTGGAAACTTTGAGTATGAGCGCCAGGTTTATCCTCTTGATCCCAGTCAAATTCTTCTTCGAGATTCTAAGCTCAGGAACACTGATTACATCTATGGGGTGGTCATTTTCACTGGTCATGACAGCAAAGTCATGCAGAATTCCACAAAATCCCCTTCAAAAAGGAGCACAATAGAAAAGAAGATGGATTATATCATATACACCCTCTTTACTGTCCTTATTTTGATATCTGTTATTAGTTCCATAGGATTTATCTTCAAGACTAAGTTCCAAACCCCAAAGTGGTGGTACTTACGGCCTGACAATATTGAATACCAGTATGATCCCAAGAAAGTTGGACTGGCTGGAATGAGTCATCTGATTACTGCGCTCATTCTTTATGGATATTTGATACCCATCTCACTTTATGTTTCCATTGAGGTTGTGAAGGTTTTACAGGCAACCTTCATCAACCAAGACATTCAAATGTATGATGAAGAAACTGGGACTCCAGCTGATGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGATACTATCCTGTCAGATAAAACTGGAACTTTGACCTGTAATCAGATGGACTTTTTGAAGTGCTCTATTGCTGGTACTGCATATGGTGTGCGCTCCAGTGAAGTTGAAGTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGACCAGGATTCAGATCTCTCCAATTTCCCCATGCCTAAGACTAAAGTGCAAGTTTCATGGGATGATGTTGGAAGAGCTCAAGAAATTGAACTGGAGACTGTTGTTACTTCCAAAGGAGATGAGGATCAAAAGCGTGCCATAAAGGGATTTGGTTTTGAAGATGACCGCCTCATGAATTGTAATTGGTTGAAAGAGCCCAATTCTGATGACCTTTTGATGTTCTTCCGAATACTAGCAGTTTGCCACACTGCCATTCCTGAGTTGAATGAGGAGACTGGCGTTTATACATATGAAGCTGAGTCACCTGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTGCAGAAGGACTCAGTCTAGTATTTTCATACGTGAAAGATTTTCTGCTTCAGGGCAAGTGGTTGAAAGAGAGTACAAACTTTTGAATCTGCTGGATTTCACTAGTAAAAGAAAGCGTATGTCAGTGATTGTGCGTGATGAGGAGGGCAGTATTTTTCTTCTGTGCAAAGGGGCTGACAGTATCATATTTGATCGCATGTCGAAGAATGGAAAATTGTATTTGGAGGCTACTACCAAACATTTAAATGAATATGGAGAAGCTGGTTTGAGAACACTAGCCCTGGCTTATAGAAAACTTGATGAGCAAGAGTACACTGCTTGGAACAATGAATTTCAGAAAGCCAAAGCAGCTGTTGGGGTTGACAGAGAGGTGATGCTTGAGCGAGTATCAGATATGATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTGCCCCAATGTATTGATAAACTTGCTCAAGCTGGTCTCAAGATCTGGGTGTTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGATTTGCTTGCAGTTTACTTCGACAGGGCATGAAGCAGATTTGTATAACTATTCCAACTTCAGACTCTGTAGCCAATGATGTTAAACAGGCCATCAAGGACAACATTTTGAATCAAATCACCAATGCTTCCCAAATGATAAAACTAGAGAAGGATCCTCATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTGACATATGCTTTAGAAGATGATATGAAGCACCAATTTTTGGGATTGGCTGTTGATTGTGCATCTGTCATCTGCTGTCGTGTGTCTCCCAAACAAAAGGCGTTGGTAACAAGGTTAGTGAAACAAGGTACTGGGAAGACTACTCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTGCGATTGCCCAATTTCGATTTTTAGAGAGGCTTCTGGTAGTCCATGGACATTGGTGTTACAAGAGGATTGCACAAATGATATGTTATTTCTTCTACAAAAATATTGCATTTGGCCTCACCATCTTCTATTTTGAGGCCTTCACAGGCTTCTCTGGTCAATCGGTTTATGATGACTGGTACATGATATTGTTCAACTGTTGTTCTGACATCATTACCTGTCATTTCACTTGGTGTTTTTGA 2982 0.4175 MTRGRIRARLRRSHFYTFGCLRPSTTEEAPHPLQGPGFSRTVYCNQPLLHEKRPLYYCKNDISTTKYNVVTFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFVQDVKVNHRKVNRHKGDGVFGPRSWQNIMVGDVVKVNKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEATLTLDNDEVFKDFTGTIRCEDPNPNLYTFVGNFEYERQVYPLDPSQILLRDSKLRNTDYIYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISVISSIGFIFKTKFQTPKWWYLRPDNIEYQYDPKKVGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVEVAAAKQMASDLEDQDSDLSNFPMPKTKVQVSWDDVGRAQEIELETVVTSKGDEDQKRAIKGFGFEDDRLMNCNWLKEPNSDDLLMFFRILAVCHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFIRERFSASGQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGSIFLLCKGADSIIFDRMSKNGKLYLEATTKHLNEYGEAGLRTLALAYRKLDEQEYTAWNNEFQKAKAAVGVDREVMLERVSDMMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITIPTSDSVANDVKQAIKDNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKHQFLGLAVDCASVICCRVSPKQKALVTRLVKQGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNCCSDIITCHFTWCF 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3208 993 SUPERFAMILY HAD-like 410 925 IPR036412 -
Ssu4g3208 993 Pfam Cation transport ATPase (P-type) 546 651 - -
Ssu4g3208 993 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 981 - -
Ssu4g3208 993 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Ssu4g3208 993 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 853 962 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3208 993 Gene3D - 419 431 IPR023214 -
Ssu4g3208 993 Gene3D - 113 288 - -
Ssu4g3208 993 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 981 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu4g3208 993 Gene3D - 720 921 IPR023214 -
Ssu4g3208 993 CDD P-type_ATPase_APLT_Dnf-like 60 981 - -
Ssu4g3208 993 SUPERFAMILY Calcium ATPase, transduction domain A 147 286 IPR008250 -
Ssu4g3208 993 SFLD Haloacid Dehalogenase 405 932 - -
Ssu4g3208 993 Gene3D - 432 459 IPR023299 GO:0000166
Ssu4g3208 993 Gene3D - 591 704 IPR023299 GO:0000166
Ssu4g3208 993 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 981 - -
Ssu4g3208 993 Pfam Phospholipid-translocating P-type ATPase C-terminal 909 981 IPR032630 -
Ssu4g3208 993 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 985 IPR023298 -
Ssu4g3208 993 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Ssu4g3208 993 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Ssu4g3208 993 Coils Coil 448 468 - -
Ssu4g3208 993 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Ssu4g3208 993 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Ssu4g3208 993 SFLD p-type atpase 405 932 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3208 Ssu-Chr4 81160523 81165801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3208 1 979 Primary Pumps ATPases AT1G17500 76.633 0.0 1575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3208 K01530 - gmx:100819559 1858.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0325 8 5410065 5413968 Ssu4g3208 4 81160523 81165801 PCT