Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3202 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCACTTATCGCGGGAGTGGAAAAGCACGGGCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCTCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCCAAAGACAAATCTAGGGTTCCCAAGCTCAAGGCTCTCCCTGCTCCTCCTCCTTCCACTTCCACCGCCGCTCCTCTAAACGCCGCTCCTGCTCCTCAAAGCGCACCGTCTGATGTTGCCGTCCCTGATCCTTCTCAAAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGGTTTTTGAAGCTCTATCAACACTAAAAGATAGTAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGCAAAAACATCAGGTTCCTCAAAACTTCAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAGATAAAAAGGGAAGCCTCCATGGGGACAAAATCACCTGCACCAAAACAAAAGGATGTCCGGTCACCACAATGGCAATCCCCAGCCTCTGCCTTTATGGCATCTGATGAGAAAATAAAGGAAGCTGCAGATACTGCAGCCGACAGAGTTGCTGTTGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAATAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCGCGTGGTGAAATTTTCCTCTTGGCTTAA 846 0.4563 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKSRVPKLKALPAPPPSTSTAAPLNAAPAPQSAPSDVAVPDPSQNDQDAKNPPRYNAMVFEALSTLKDSNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKREASMGTKSPAPKQKDVRSPQWQSPASAFMASDEKIKEAADTAADRVAVAESKSYLAAEAIKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIFLLA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3202 281 Gene3D - 113 203 IPR036388 -
Ssu4g3202 281 MobiDBLite consensus disorder prediction 53 119 - -
Ssu4g3202 281 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Ssu4g3202 281 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu4g3202 281 MobiDBLite consensus disorder prediction 53 67 - -
Ssu4g3202 281 MobiDBLite consensus disorder prediction 185 208 - -
Ssu4g3202 281 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Ssu4g3202 281 Gene3D - 2 58 - -
Ssu4g3202 281 PANTHER SINGLE MYB HISTONE 4 1 280 IPR044597 GO:0003691
Ssu4g3202 281 CDD H15 119 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu4g3202 281 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Ssu4g3202 281 MobiDBLite consensus disorder prediction 103 117 - -
Ssu4g3202 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Ssu4g3202 281 SMART sant 4 59 IPR001005 -
Ssu4g3202 281 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 280 - -
Ssu4g3202 281 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu4g3202 281 CDD SANT_TRF 6 56 - -
Ssu4g3202 281 Pfam linker histone H1 and H5 family 119 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu4g3202 281 SUPERFAMILY "Winged helix" DNA-binding domain 116 197 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3202 Ssu-Chr4 81128421 81132381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3202 1 281 Single Myb Histone (SMH) Gene Family AT1G72740 49.117 2.94e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu4g3202 Linker_histone 7.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3202 K09422 - gmx:780537 411.764