LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g3193	ATGAGTGCTACAGATGGCCTAATGAGAGGAATGGAAATGATTGACACAGGAGCTCCCCTAAGTGTTCCAATAGGCAGAGCAATTCTAGGACGAATTTTCAATGTACTTGGAAAGCCTATTGATAATTTAGGTCCGGTAGATACTCGCACAACATCTCCCATTCATAGATCTGCGCCTGCCTTTATACAATTAGAtacaaaattatctatttttggAAGAAGAATAAAAGTAGTAGATATTTTAGCTCCTTATCATCGTGGAGGAAAAATAGGACATTTCAGTGGAGCTGGAGTGGGCAAAACAATACTCATTATGGAATTGATCAATAAAATGCTAAAGCTCATTGAGTCCAAGCAGGATTTGAAGTATTTGCCTTATTGGGTTGAATGCCCTCTGTTGTGGGTTATCAAGCCACTTTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATTACTTATACCAAAAGAAGGGTCCACAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTAACTAATCCTGCCCCTGCTACGACATATGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAACAGCCAAAGGTATCTATCCAGCGATAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTCGGATTGTTGGTGAAGAACATTATGAGACTACACAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAGACATTATAGCTATTGTTAGCTTGGACGAATTATCCAAAGAAGATCGCTTAACCGTATCAAGAGCATGA	789	0.3764	MSATDGLMRGMEMIDTGAPLSVPIGRAILGRIFNVLGKPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFGRRIKVVDILAPYHRGGKIGHFSGAGVGKTILIMELINKMLKLIESKQDLKYLPYWVECPLLWVIKPLLVLKWVLYKKELLIPKEGSTTSIQAVYVPADDLTNPAPATTYAHLDATTVLSRGLTAKGIYPAIDPLDSTSTMLQPRIVGEEHYETTQRVKQTLQRYKELQDIIAIVSLDELSKEDRLTVSRA	262

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g3193	262	Gene3D	-	146	214	IPR027417	-
	Ssu4g3193	262	PANTHER	F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT	153	262	-	-
	Ssu4g3193	262	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	155	210	IPR000194	GO:0005524
	Ssu4g3193	262	PANTHER	F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT	1	113	-	-
	Ssu4g3193	262	ProSitePatterns	ATP synthase alpha and beta subunits signature.	201	210	IPR020003	GO:0005524
	Ssu4g3193	262	Gene3D	-	1	123	-	-
	Ssu4g3193	262	Gene3D	-	215	262	IPR024034	-
	Ssu4g3193	262	SUPERFAMILY	C-terminal domain of alpha and beta subunits of F1 ATP synthase	213	262	-	-
	Ssu4g3193	262	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	21	214	IPR027417	-
	Ssu4g3193	262	PANTHER	ATP SYNTHASE	153	262	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g3193	Ssu-Chr4	80828599	80829633	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g3193	155	257	Primary Pumps ATPases(2)	AT1G76030	30.556	2.76e-06	46.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g3193	K02112		-	csin:114305725	197.593

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