Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3193 ATGAGTGCTACAGATGGCCTAATGAGAGGAATGGAAATGATTGACACAGGAGCTCCCCTAAGTGTTCCAATAGGCAGAGCAATTCTAGGACGAATTTTCAATGTACTTGGAAAGCCTATTGATAATTTAGGTCCGGTAGATACTCGCACAACATCTCCCATTCATAGATCTGCGCCTGCCTTTATACAATTAGAtacaaaattatctatttttggAAGAAGAATAAAAGTAGTAGATATTTTAGCTCCTTATCATCGTGGAGGAAAAATAGGACATTTCAGTGGAGCTGGAGTGGGCAAAACAATACTCATTATGGAATTGATCAATAAAATGCTAAAGCTCATTGAGTCCAAGCAGGATTTGAAGTATTTGCCTTATTGGGTTGAATGCCCTCTGTTGTGGGTTATCAAGCCACTTTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATTACTTATACCAAAAGAAGGGTCCACAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTAACTAATCCTGCCCCTGCTACGACATATGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAACAGCCAAAGGTATCTATCCAGCGATAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTCGGATTGTTGGTGAAGAACATTATGAGACTACACAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAGACATTATAGCTATTGTTAGCTTGGACGAATTATCCAAAGAAGATCGCTTAACCGTATCAAGAGCATGA 789 0.3764 MSATDGLMRGMEMIDTGAPLSVPIGRAILGRIFNVLGKPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFGRRIKVVDILAPYHRGGKIGHFSGAGVGKTILIMELINKMLKLIESKQDLKYLPYWVECPLLWVIKPLLVLKWVLYKKELLIPKEGSTTSIQAVYVPADDLTNPAPATTYAHLDATTVLSRGLTAKGIYPAIDPLDSTSTMLQPRIVGEEHYETTQRVKQTLQRYKELQDIIAIVSLDELSKEDRLTVSRA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3193 262 Gene3D - 146 214 IPR027417 -
Ssu4g3193 262 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 153 262 - -
Ssu4g3193 262 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 155 210 IPR000194 GO:0005524
Ssu4g3193 262 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 113 - -
Ssu4g3193 262 ProSitePatterns ATP synthase alpha and beta subunits signature. 201 210 IPR020003 GO:0005524
Ssu4g3193 262 Gene3D - 1 123 - -
Ssu4g3193 262 Gene3D - 215 262 IPR024034 -
Ssu4g3193 262 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 213 262 - -
Ssu4g3193 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 214 IPR027417 -
Ssu4g3193 262 PANTHER ATP SYNTHASE 153 262 - -
Ssu4g3193 262 PANTHER ATP SYNTHASE 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3193 Ssu-Chr4 80828599 80829633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3193 155 257 Primary Pumps ATPases(2) AT1G76030 30.556 2.76e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3193 K02112 - csin:114305725 197.593