Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3187 ATGTCCGACCCCGAACCTGGCTCCGAACCAAAAACCCAAACCCGAGTCTACAACCCCTACAAGGACCTCGATGTCCCCATTCGAAACCTCTACCACCTCCCAACCTCACCGGAGTTCCTCTTCGTTGAGGAGGCCCGCCGCACGCGCCGCTCCTGGGGGGAGAACCTCACCTTCTACACCGGCTGCGGCTACCTCGCCGGAGCCCTCGGCGGCGCCGGCGCAGGCCTCGTCGACGGCGTCAGGGCCTTCGAGACCGGTGACACCGCGAAGCTCCGAACCAACCGCGTGCTGAACGCGTCGGGACACTCGGGGTTGTTCTACGCCGGAATCGAGAGCGGTATCGAGGCGGCGAGAGACGCCGACGACGTGTGGAACAGCGTCGCGGCGGGGCTCGGCACCGGCGCGCTGTACCGGGCGGCGAGAGGGGTGCGATCGGCGGCAGTGGCCGGAGCGGTGGGTGGCGCTGTGGTCGGAGTGGCCGTGGCGGCGAAGCAGGCGTTGAAACGATATGTGCCTATATGA 522 0.6724 MSDPEPGSEPKTQTRVYNPYKDLDVPIRNLYHLPTSPEFLFVEEARRTRRSWGENLTFYTGCGYLAGALGGAGAGLVDGVRAFETGDTAKLRTNRVLNASGHSGLFYAGIESGIEAARDADDVWNSVAAGLGTGALYRAARGVRSAAVAGAVGGAVVGVAVAAKQALKRYVPI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3187 173 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-2-LIKE 13 173 - -
Ssu4g3187 173 PANTHER TIM23 13 173 IPR045238 GO:0022857
Ssu4g3187 173 Pfam Tim17/Tim22/Tim23/Pmp24 family 58 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3187 Ssu-Chr4 80673231 80673784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3187 13 173 Chloroplast and Mitochondria Gene Families AT1G72750 63.429 1.31e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3187 K17794 - gmx:100777112 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0332 8 5527687 5528280 Ssu4g3187 4 80673231 80673784 PCT