Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3183 atgaaggaaattaCACTTTCAGCAGGAGGCTCCACCGTCATCGCCGTCAGCGGCAGCCGGCATAGCCATTGCGCCGTCAAATGGGCGGTGGAGCACCTTCTAAAGAAGAACTCCCCATGCATCCTTATTCATGTTCGAACCAAGACCATGCATCCCCATGACGCTGTTGACGTGCCTAAACACGGTCGTCCTCCAACTGAAGAAGAATTGCACCAATTCTTTCTTCCCTTCCGAGGGTTTTGTGCCCGAAAAGGGATCGCAGCAGAGGAATTGGTCCTGCATGACCTTGATGTTCCAAATGCGCTTACAGATTACGTCGTTGAAAATTGTATCAGCACTGTTGTTGTTGGTGCTAATTCTTCTTCCTGGAGTAATCTTATAAGGTCCTCATTTAATAAAGATGTAGATGTGCCAACTAGTTTAGCGAAGTCTTTGCCAGAGACTTGCACTTTATATGTTATATCAAGAGGAAAAGTACAACATATCCGACCAGCAGGTCATCATCCTCGTCATCAGGATATTAAAGTCACACCAACTAGATCTATAAGAGACATAGTCGCTCTCTTGCAAAATGCTCCATTGGTTCATCCACATACGAATCTTGCCGATACCCCTGCAGATTCTGAAGATATAAACAGGAAACCAATCAAAGATGCAATTGGGACAGACTCCAGCAAAGTTTGGGAATCTTTACGTGATATAAAAGATGCCACACTAACAACATCACATAAGTCCAGTGAAGATAGCAATTCACCAAGAGGTCCAGCAGAATACTCCTCATCACGAAATTCATCAGCTAGAAGTTCTCCTGCAAACAGTGACAGCTCAGGGCAACTGCTTGGTCCTCCTTTGACTGATAAGTCACATGGAAACCATGTAGTAGCTGTAAACTCAGACAAGCCTAAGTGCACCTCTTCTTCAAAACCCCCCGTAAACTTAGAGATGGAGATAAGGAAACTGAAACAAGAACTGAAGAAAACAACAGAGAAGTATGGCATGGCTTGCAAAGATGCTGTTTTAGCAAAACAGAAGGCAATAGAGCTTGAAAAGTGTAGGCAAGAAAAGGAACGCAATGTAGAAGAACATAGGCTTGCTGAAGAGGCTGCATTGGCTTTGGCAGAGGTAGAGAGGCAGAAAGCCAAAGTGGCTATGGAATCAGCAGAAATGTCACAACGCCTGGCAGAAATGGAAACCCAAAAGAGAAAGGAAGCCGAACTAAGAGCCAAGCACGAGGAAGAAGAGATGAACAAAGCATTGCATGAAGTTGTATGCAATAGTATTCCATATAGAAGATACAAACTTGAAGAAATTGAAGCTGCAACAAATAACTTTAACAGAGCATTGAAAATTGGGGAAGGTGGATATGGACCTGTTTTTAGAGGAGTGCTTGATCACACTGTTGTTGCCATTAAGGCCGTGAGACCAGACCTAGCCCATGGAGAGAGGCAATTTCAACAAGAGGTTATTGTTTTGAGCACCATAAGACATCCAAGCATGGTGCTCCTCCTAGGAGCATGCCCGGAGTATGGATGCCTTGTGTACGAGTACATGGAAAACGGCAGCTTAGAAGACCGTCTCTTCCAGAAAGACAACACTCCACCAATTCCATGGAAAACACGTTTCAAAATAGCGTCGGAGGTTGCCACTGGCCTTCTTTTCCTTCACCAAAGAAAGCCTGAACCCCTTGTGCACCGCGACCTTAAGCCAGCAAACATCCTCTTAGACAAGAACTACGTGAGCAAGATCAGCGACGTGGGTTTGGCACGCCTTGTTCCCCCTTCTGTGGCCAACAAAACCACGCAATATCGCTTGACGGGTGCAGCTGGAACGTTTTGCTACATTGACCCTGAGTACCAACAAACGGGGTTGTTGGGTGTGAAATCGGATATATACTCCTTAGGTGTGGTGCTGCTACAGATCATTACAGGAAAGCCTCCAATGGGTTTGTCACACTTGGTTGAGAAGGCTATTCAGACAGGCACGTTCACTGAGGTGCTTGATCTAAGTGTCACAGATTGGCCTGTGGAAGAGGCTTTGGCATATGCCAAGTTGGCCTTGAAGTGTTGTGAGTTGAGAAAACGCGACAGACCAGACCTTGCTACTGTTGTTTTGCCTGAGCTGAATAGGATATCAGGGATATGGGACTGTGAGGACGCACATTCGCCttcgagaaattattacatagtccAAAATCACAGTAGTCCTAACCAATCTATATATAAGTGA 2226 0.4474 MKEITLSAGGSTVIAVSGSRHSHCAVKWAVEHLLKKNSPCILIHVRTKTMHPHDAVDVPKHGRPPTEEELHQFFLPFRGFCARKGIAAEELVLHDLDVPNALTDYVVENCISTVVVGANSSSWSNLIRSSFNKDVDVPTSLAKSLPETCTLYVISRGKVQHIRPAGHHPRHQDIKVTPTRSIRDIVALLQNAPLVHPHTNLADTPADSEDINRKPIKDAIGTDSSKVWESLRDIKDATLTTSHKSSEDSNSPRGPAEYSSSRNSSARSSPANSDSSGQLLGPPLTDKSHGNHVVAVNSDKPKCTSSSKPPVNLEMEIRKLKQELKKTTEKYGMACKDAVLAKQKAIELEKCRQEKERNVEEHRLAEEAALALAEVERQKAKVAMESAEMSQRLAEMETQKRKEAELRAKHEEEEMNKALHEVVCNSIPYRRYKLEEIEAATNNFNRALKIGEGGYGPVFRGVLDHTVVAIKAVRPDLAHGERQFQQEVIVLSTIRHPSMVLLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPPIPWKTRFKIASEVATGLLFLHQRKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPSVANKTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITGKPPMGLSHLVEKAIQTGTFTEVLDLSVTDWPVEEALAYAKLALKCCELRKRDRPDLATVVLPELNRISGIWDCEDAHSPSRNYYIVQNHSSPNQSIYK 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3183 741 Gene3D HUPs 12 136 IPR014729 -
Ssu4g3183 741 PANTHER OS02G0152300 PROTEIN 11 714 - -
Ssu4g3183 741 SMART serkin_6 444 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3183 741 MobiDBLite consensus disorder prediction 197 218 - -
Ssu4g3183 741 MobiDBLite consensus disorder prediction 239 310 - -
Ssu4g3183 741 Coils Coil 348 421 - -
Ssu4g3183 741 Gene3D Transferase(Phosphotransferase) domain 1 517 719 - -
Ssu4g3183 741 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 125 - -
Ssu4g3183 741 Gene3D Phosphorylase Kinase; domain 1 422 516 - -
Ssu4g3183 741 SUPERFAMILY Protein kinase-like (PK-like) 423 703 IPR011009 -
Ssu4g3183 741 Pfam Protein kinase domain 447 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3183 741 Pfam Universal stress protein family 13 130 IPR006016 -
Ssu4g3183 741 MobiDBLite consensus disorder prediction 243 282 - -
Ssu4g3183 741 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 11 714 - -
Ssu4g3183 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672|GO:0006468
Ssu4g3183 741 ProSiteProfiles Protein kinase domain profile. 444 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3183 741 CDD STK_N 11 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3183 Ssu-Chr4 80639968 80645645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3183 7 738 Receptor kinase-like Gene Family AT1G78940 45.407 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu4g3183 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3183 - - gmx:100799611 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3183 4 80639968 80645645 Ssu4g3183 4 80639968 80645645 ECH
Ssu4g3183 4 80639968 80645645 Ssu8g0333 8 5533885 5539633 PCT