Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3170 ATGAGCATGACCGTGGCTGAGGAAGAATCTGGTGAAGAGGTTCATGTTCCGGGTGAGATTGATTGGCAAATGCTTGATAAATCAAAGTTTTTCTTCCTTGGTGCTGCTCTTTTCTCTGGGGTTTCTGCAACCCTTTACCCTGTGGTTGTGTTGAAGACTAGGCAGCAAGTGGCTCAGTCCCAAGTTTCTTGCATCAACACAGCATTTTCATTGATTAGGGGTGAGGGTTTTAGAGCATTGTACCGTGGGTTCGGGACTTCTTTGATGGGAACGATCCCTGCTAGGGCTCTTTACATGGCTGCATTAGAGGTTACCAAGAGCAATGTGGGCACTGCCACTGTTAGGTTTGGTCTTGCTGAGCCCACTGCTGCTGCAGTTGCCAATGCGGCTGCTGGCTTGAGTGCAGCCATGGCAGCTCAGCTTGTGTGGACCCCTGTTGATGTTGTGAGCCAGAGGCTGATGGTTCAAGGTGGTTGTGATTCCGGCAATCCTAAGGCTTCGGCTTTTCGGTACATCAATGGGATTGATGCCTTCAGGAAGATTTTGAGCAGTGATGGTCTCAGGGGCTTGTATAGGGGTTTTGGGATCTCAATTTTGACCTATGCCCCTTCAAATGCAGTCTGGTGGGCTTCATATTCTGTTGCACAAAGGATGGTTTGGGGTGGAGTTGGGTACTACTTGTGCAAGGGGGGTGATAGTGCAGCTAACAGTGCATTGAAGCCTGATACAAAGACTGTGATGGCAGTGCAGGGAGCCAGTGCAGCAGTGGCTGGTGGCATGGCTGCTTTGATCACCATGCCACTGGACACCATCAAGACAAGACTGCAGGTCTTGGATGGCGACGAGAACGGCCGTTGTAGACCGACGGTTATGCAGACGGTGAGGAATCTGGTTAAGGAAGGCGGTTGGATGGCTTGTTATAGAGGATTGGGGCCTAGGTGGGCTTCAATGTCAATGTCTGCAACAACAATGATCACAACTTATGAGTTCCTCAAACGGCTCTCCGCGAAGAATCAAGAGGTTTTGACATAA 1032 0.5 MSMTVAEEESGEEVHVPGEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCINTAFSLIRGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVRFGLAEPTAAAVANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGGCDSGNPKASAFRYINGIDAFRKILSSDGLRGLYRGFGISILTYAPSNAVWWASYSVAQRMVWGGVGYYLCKGGDSAANSALKPDTKTVMAVQGASAAVAGGMAALITMPLDTIKTRLQVLDGDENGRCRPTVMQTVRNLVKEGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSAKNQEVLT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3170 343 SUPERFAMILY Mitochondrial carrier 23 331 IPR023395 -
Ssu4g3170 343 Gene3D Mitochondrial carrier domain 29 341 IPR023395 -
Ssu4g3170 343 Pfam Mitochondrial carrier protein 125 219 IPR018108 -
Ssu4g3170 343 Pfam Mitochondrial carrier protein 249 338 IPR018108 -
Ssu4g3170 343 Pfam Mitochondrial carrier protein 37 108 IPR018108 -
Ssu4g3170 343 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 340 - -
Ssu4g3170 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Ssu4g3170 343 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 340 - -
Ssu4g3170 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 334 IPR018108 -
Ssu4g3170 343 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Ssu4g3170 343 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Ssu4g3170 343 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Ssu4g3170 343 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Ssu4g3170 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3170 Ssu-Chr4 80230808 80231839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3170 1 340 Chloroplast and Mitochondria Gene Families AT1G72820 73.623 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3170 K15121 - gmx:100784616 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3170 4 80230808 80231839 Ssu8g0336 8 5565199 5566218 ECH
Ssu4g3170 4 80230808 80231839 Ssu4g3170 4 80230808 80231839 ECH