Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3167 ATGGACTCGCGCACACAGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGTCTCATCAAAGCCCTAACCACCGATGTTGAAGATTTCTACAACCAGTGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGCTTTCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTGCCACCAGAACTTCCTGAGCCCGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAGGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCCAAGGAACGGGCTCCGGAATCTCAGAGTAGGCAGACAAAAGCATTGCAACCAAAAGATGAGGATGAAGAACTGGATGAGCAAGATGACGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGTCCCTGA 762 0.4593 MDSRTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKERAPESQSRQTKALQPKDEDEELDEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3167 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Ssu4g3167 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 253 - -
Ssu4g3167 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Ssu4g3167 253 MobiDBLite consensus disorder prediction 159 183 - -
Ssu4g3167 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Ssu4g3167 253 Pfam PHD-finger 200 249 IPR019787 -
Ssu4g3167 253 SMART PHD_3 199 247 IPR001965 -
Ssu4g3167 253 PANTHER CPG BINDING PROTEIN 6 253 IPR045104 GO:0006355|GO:0042393
Ssu4g3167 253 CDD PHD_AL_plant 199 249 IPR044104 -
Ssu4g3167 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Ssu4g3167 253 MobiDBLite consensus disorder prediction 145 193 - -
Ssu4g3167 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3167 Ssu-Chr4 80185185 80189183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3167 7 252 Alfin-like Transcription Factor Family AT3G42790 77.236 5.87e-128 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu4g3167 Alfin 3.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3167 - - gmx:100170700 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3167 4 80185185 80189183 Ssu8g0337 8 5568692 5573499 ECH
Ssu4g3167 4 80185185 80189183 Ssu4g3167 4 80185185 80189183 ECH
Ssu8g0337 8 5568692 5573499 Ssu4g3167 4 80185185 80189183 PCT