Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3161 ATGTTGACTTGCATAGCGTGTACCAAGCAACTCAATAATGGATCTCTTCgccaagaagaagaggaagaagctgTGCACACACCCAGCACCAGGCAAGCCATCAAGGCTCTCACTGCTCAGATCAAGGACATGGCGGTGAAGGCTTCTGGGGCCTATAAGAGCTGCAGGCCTTGCTCAGGATCTTGCAATGGTAACAGGAATAGGAAGTATGCAGACTCAGATATGGGGTCAGATTCAGCAAGGTTCAACTGGGCCTACCGCAGAACTGGGAGCTCCAATTCAACCCCAAGGATGTGGGGGAAGGAAGTGGAAGGTGGTAGGGTGAAAGGGCTTTCCAGTGGGGAAGGAACACCAGCATCAGTGAGTGGACGCACTGAGTCAGTGGTGTTCATGGAGGAGGATGAGCCTAAGGAGTGGATTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCTCAGGGAGGGAATGATCTCAAGCGGATACGGTTCAgTCgtgaaatgtttaataaatggCAAGCTCAGAGGTGGTGGGCAGAGAATTATGACAAGGTCATGGAGTTGTACAATGTTCAGAGGTTCAATCAGCAAGCAGTTCCCCTTCCAACCCCACCTAGATCTGAGGATGAGAGCTCAAAGATTGAATCTGCTAGGGACAGTCCTGTCACTCCTCCACTCAGCAAAGAGCGCGCACCCCGTTGTTTTCATCATCCAATGGGAATGGGCTACTCCTCATCAGATTCACTGGATCACCAACAAATGCAACCTCACCCTTGCTATGAAACAAGCGGTCTGGCATCAACGCCTAATCTTTCCAACATTAGTGCACCAAAGACAGAAAGATCATCCATTGATGGTTCTGTAAGGACCAGTTCATCGGAGAGGAAGATCACTCGGGTGAGTTTTCAATCAGCAATGCCAGTGATATGGAAACTGAATGGGTTGAACAGGATGAACCAGGAGTATACATCACTATCAGAGCGCTGCCAGGTGGCACCAGAGAACTAA 1014 0.4744 MLTCIACTKQLNNGSLRQEEEEEAVHTPSTRQAIKALTAQIKDMAVKASGAYKSCRPCSGSCNGNRNRKYADSDMGSDSARFNWAYRRTGSSNSTPRMWGKEVEGGRVKGLSSGEGTPASVSGRTESVVFMEEDEPKEWIAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNQQAVPLPTPPRSEDESSKIESARDSPVTPPLSKERAPRCFHHPMGMGYSSSDSLDHQQMQPHPCYETSGLASTPNLSNISAPKTERSSIDGSVRTSSSERKITRVSFQSAMPVIWKLNGLNRMNQEYTSLSERCQVAPEN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3161 337 Pfam Transcription factor regulating root and shoot growth via Pin3 137 191 IPR013591 -
Ssu4g3161 337 ProSiteProfiles BRX domain profile. 137 192 IPR013591 -
Ssu4g3161 337 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Ssu4g3161 337 MobiDBLite consensus disorder prediction 200 288 - -
Ssu4g3161 337 MobiDBLite consensus disorder prediction 247 288 - -
Ssu4g3161 337 PANTHER PROTEIN BREVIS RADIX-LIKE 3 1 297 - -
Ssu4g3161 337 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 297 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3161 Ssu-Chr4 80063638 80066561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3161 1 242 Major Intrinsic Protein MIP AT1G31880 49.225 9.32e-66 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3161 - - gmx:100805480 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3161 4 80063638 80066561 Ssu4g3161 4 80063638 80066561 ECH