Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3149 ATGGGTAGACGTCCCTGCTGTCCGAAAGAGATTAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTTTCCAAATATGTTGCCATCCATGGCGAAGGGAAGTGGCAAAAGGTTGCCCAAAATGCAGGGTTAAAGCGATGTGGGAAAAGTTGCAGGCAGAGATGGTTGAATTATCTCAAGCCCGGCATAAAGAGAGGCGACATCTCTCTGGATGAAGAGGATATGATTATAAGACTTCATCGTCTTCTTGGTAACagATGGGCATTGATAGCAAAGAGGCTACCTGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACTAATTTGTCAAAGAAGTTACAAAAACAGCCTATATCATTGTCTGTTTCTTCACTTGAACACAAACGTCATGAAGAGGAAAAGACCAAACTAGTGCATGTGGCACCCGAAGCTCCATGGCCTAGGAGAGTTAAGGCAGTTCAATACGGTAAAATTTCGGAGAATGGTGGGTGTGATAATAGGCGTAGTAGTACTACTCCCAGTACTCCCTCAAACAAAATAGAGGCTAGTAGTGATGAAGCTTCTTTTAGTGATTTCCTCATTGATATTGATGAAAACCAATTGTTGATTGCTGATGATTCCAACTCAAAGTTCCCACAAATGGAAGAAGACCCCCACCACAACAAGGAAGGCTTAATCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACAGTCTTCTCTCAGAGAAATTAGACCCTCTAGAGACCCTTTTGGATGTGGAGCTTAAGAAGATGGCCTCTTTTCTTGGACTTGAAAATGATTGA 816 0.4265 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISLDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKQPISLSVSSLEHKRHEEEKTKLVHVAPEAPWPRRVKAVQYGKISENGGCDNRRSSTTPSTPSNKIEASSDEASFSDFLIDIDENQLLIADDSNSKFPQMEEDPHHNKEGLINSPSSSSPSDHCHSLLSEKLDPLETLLDVELKKMASFLGLEND 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3149 271 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu4g3149 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Ssu4g3149 271 SMART sant 65 113 IPR001005 -
Ssu4g3149 271 SMART sant 12 62 IPR001005 -
Ssu4g3149 271 Gene3D - 10 66 - -
Ssu4g3149 271 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 266 - -
Ssu4g3149 271 PANTHER MYB TRANSCRIPTION FACTOR 1 266 - -
Ssu4g3149 271 CDD SANT 15 60 IPR001005 -
Ssu4g3149 271 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Ssu4g3149 271 MobiDBLite consensus disorder prediction 165 185 - -
Ssu4g3149 271 MobiDBLite consensus disorder prediction 211 242 - -
Ssu4g3149 271 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ssu4g3149 271 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu4g3149 271 Gene3D - 69 141 - -
Ssu4g3149 271 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ssu4g3149 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Ssu4g3149 271 MobiDBLite consensus disorder prediction 226 241 - -
Ssu4g3149 271 MobiDBLite consensus disorder prediction 160 185 - -
Ssu4g3149 271 CDD SANT 70 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3149 Ssu-Chr4 79783973 79785440 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3149 1 120 MYB Transcription Factor Family AT4G34990 61.983 2.80e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g3149 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3149 K09422 - gmx:547568 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3149 4 79783973 79785440 Ssu4g3149 4 79783973 79785440 ECH