Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3147 ATGGGAAGGAGTCCTTGTTGTTCTAAGGAGGGTTTGAACAAAGGAGCATGGACAGCTCTGGAAGACAAAATTCTGACAGAATACATTAACATTCATGGCGACGGAAAATGGAGACACTTGCCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAAAGCTGCAGGCTAAGATGGTTGAATTATCTAAGACCTGGCATTAAAAGAGGCAACATTACTAATGATGAAGAGGAGCTTATAATCAGGCTTCACAATCTTCTTGGAAACAgGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATTGGAAGGAAGCTTCAAAACGGAACCCCAGGGTATTCCATTATAAGTGGTGGTGCACGAAGCACTTTAAACACGGTTCAACAAGATCATCGAAACCATAAAAACCAAGAGTGGCACTATCCTTATCCACCAGATAAGGGTTCGTGTCTTGTTCAGACTAAAGCAACAAGGTGGACTAAGGTCACAGTCACTAAGGAAATTACTCAACAAAATGAAGGGATTAAGAGCAATGTTGTTGATAACAAAATGAAGGGATTTTCAATGTCCCCATCTTCAGAGAGTAACAACGATCCAGTATTGCATTTCATGGCAGATCTTGAGATGGATGGCAATTTCTTCTCGGAGCTACTCAAGATGGATTTGCCCGAATCATCTTGTCCGGAAAATAAGATACTGGAAGACAATGGTAACCCTAGCACAGTTGAGAAAGGCCATTTATCTCCAAAATCATCCAGTGATACCACCCACTTCCCTTGGGGTGATTCATTGTATGacacaaattttgattttctaccAATGACAACTTTTATGGAGTCTGGATTTGATTGGCTCTGA 888 0.4077 MGRSPCCSKEGLNKGAWTALEDKILTEYINIHGDGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTPGYSIISGGARSTLNTVQQDHRNHKNQEWHYPYPPDKGSCLVQTKATRWTKVTVTKEITQQNEGIKSNVVDNKMKGFSMSPSSESNNDPVLHFMADLEMDGNFFSELLKMDLPESSCPENKILEDNGNPSTVEKGHLSPKSSSDTTHFPWGDSLYDTNFDFLPMTTFMESGFDWL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3147 295 CDD SANT 16 61 IPR001005 -
Ssu4g3147 295 MobiDBLite consensus disorder prediction 241 264 - -
Ssu4g3147 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu4g3147 295 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Ssu4g3147 295 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 253 - -
Ssu4g3147 295 SMART sant 13 63 IPR001005 -
Ssu4g3147 295 SMART sant 66 114 IPR001005 -
Ssu4g3147 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu4g3147 295 Gene3D - 70 149 - -
Ssu4g3147 295 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 253 - -
Ssu4g3147 295 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu4g3147 295 CDD SANT 71 112 IPR001005 -
Ssu4g3147 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu4g3147 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu4g3147 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu4g3147 295 MobiDBLite consensus disorder prediction 236 264 - -
Ssu4g3147 295 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3147 Ssu-Chr4 79708656 79710043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3147 1 116 MYB Transcription Factor Family AT2G16720 75.000 3.22e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g3147 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3147 K09422 - gmx:100809225 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0600 6 9414324 9415640 Ssu4g3147 4 79708656 79710043 ECH
Ssu4g3147 4 79708656 79710043 Ssu4g3147 4 79708656 79710043 ECH
Ssu4g3147 4 79708656 79710043 Ssu5g0670 5 15835142 15837571 ECH