Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3145 ATGAGTAACTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGGAGGAGGGTATTCTCATCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTGTGTGTTGCTGACTCCTTTAGCCACTCTGCTGCACCTCAAGAATGGAGATATGATAATGCAATAGGAGGAGGGAATTCCAATGAAGAAGGACCTAAGCTTGAAGACTTTTTGGGTTGCTACTCAAACTCCCCCGTGGCTGAATCTAAAGTCTTCTGCCAAGACTCCCAACATGACCAAAACCAAAGCCAGAGTAATGTTTCCAAAATCAATGTTAATGTGGCACCAAGCTTTTGCACCAATGCAGAGGTTGAAACTGGGGAGAGCCTCACACACCCGTCTTCTTTGCTTCAATCTTTCCATGCATATAATGATAACTCACATGCCCTTATCCCCACCAATGGGATGTACAAGTCCTGGTTGGCACAAACTCAGTTTTCTGATGGAAAACCTTCAACTGAGGCTAATGGGTGTAATTTCCAATCTCTGTCCCTCACTATGAGCCCCAGTGTGCAAAATGGGGTGGGTGCAATTTCCTCTGTTCAAGTGAGTGAGGACAATAGGAAACGGGTCATGGCAAAATCTCATGCTAGAGAACCAGTCCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTTACGAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGACAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTCGAAGAGATGAAGAACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGCGTGACAAGACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCTGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATTTGCTCAAGCTCCACTCTCATTGCAGGAGATCTTGCTAAACGGTCTCCTAAAGAATCAGCCCCGGTTGCCACCAAGGACTTCAATTCGTGCGGTTTGTCGATGCCGTCTCAGCCACCTCCTATGGCTGTAACTGACGGTGAAAATTCTGATGAGTTGTCCAACTTGATGTGGAATGCAAACAGTGATGAGCAAGCACAGAATGAGAGTGCTAACATCAACAATGTCGCTGAATCATCACAACAGGTTTCACCAAGCAACAAGGATGCTTTGAACCCCCAAAGCCCCAAGTGTTCTGTGGGGCTACCCAATGAATTTGGAGTCAGTGGAGCAGATTATGGACATGGGTACTTCACCCTGGATGGACCAAAATATGATGATGGAAACAGTGAAAACGACCACATGAACACTAACAGGCTCGGAAATTTGGGATTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1713 0.4518 MSNWLGFSLTPHLRIDEEFGRENQERGGGGYSHPSSHPHLSVMPLRSDGSLCVADSFSHSAAPQEWRYDNAIGGGNSNEEGPKLEDFLGCYSNSPVAESKVFCQDSQHDQNQSQSNVSKINVNVAPSFCTNAEVETGESLTHPSSLLQSFHAYNDNSHALIPTNGMYKSWLAQTQFSDGKPSTEANGCNFQSLSLTMSPSVQNGVGAISSVQVSEDNRKRVMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESAPVATKDFNSCGLSMPSQPPPMAVTDGENSDELSNLMWNANSDEQAQNESANINNVAESSQQVSPSNKDALNPQSPKCSVGLPNEFGVSGADYGHGYFTLDGPKYDDGNSENDHMNTNRLGNLGLVNQVPMFALWNE 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3145 570 Pfam AP2 domain 245 303 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 Pfam AP2 domain 346 397 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 SUPERFAMILY DNA-binding domain 346 407 IPR016177 GO:0003677
Ssu4g3145 570 ProSiteProfiles AP2/ERF domain profile. 347 405 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 PRINTS Ethylene responsive element binding protein signature 387 407 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 Gene3D AP2/ERF domain 347 407 IPR036955 GO:0003700|GO:0006355
Ssu4g3145 570 Gene3D AP2/ERF domain 244 313 IPR036955 GO:0003700|GO:0006355
Ssu4g3145 570 MobiDBLite consensus disorder prediction 490 511 - -
Ssu4g3145 570 SUPERFAMILY DNA-binding domain 244 313 IPR016177 GO:0003677
Ssu4g3145 570 ProSiteProfiles AP2/ERF domain profile. 245 311 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 CDD AP2 346 407 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 39 492 - -
Ssu4g3145 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 492 - -
Ssu4g3145 570 SMART rav1_2 245 317 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 SMART rav1_2 347 411 IPR001471 GO:0003700|GO:0006355
Ssu4g3145 570 MobiDBLite consensus disorder prediction 442 462 - -
Ssu4g3145 570 CDD AP2 244 313 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3145 Ssu-Chr4 79689937 79693263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3145 1 434 AP2-EREBP Transcription Factor Family AT1G72570 51.183 7.39e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu4g3145 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3145 K09285 - gmx:100805489 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3145 4 79689937 79693263 Ssu4g3145 4 79689937 79693263 ECH