Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3141 ATGAATGCAAGTGCAAGAAATAGGTCTCCTTTCACACCAACTCAGTGGCAAGAACTTGAGCAACAAGCTCTTGTTTTTAAGTACATGGTTACAGGAACACCTATCCCACCAGATCTCATCTACTCTATTAAAAGAAGTCTAGACTCTTCAATTTCTTCAAGGCTCTTCCCACAGCATCCCTTTGGGTGGGGATGTTTTGAAATGGGATATGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCGAAGGAAGCATATCCAGACTCCAAATACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACAAACAACCCCAAACCCAAACAGTCCCCCCATCTTATAGCAGAAACCTTTCCTTGA 435 0.4483 MNASARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPQHPFGWGCFEMGYGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNNPKPKQSPHLIAETFP 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3141 144 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Ssu4g3141 144 Pfam QLQ 10 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu4g3141 144 MobiDBLite consensus disorder prediction 102 144 - -
Ssu4g3141 144 PANTHER - 3 132 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu4g3141 144 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 3 132 - -
Ssu4g3141 144 Pfam WRC 76 118 IPR014977 -
Ssu4g3141 144 SMART QLQ_2 9 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu4g3141 144 MobiDBLite consensus disorder prediction 116 135 - -
Ssu4g3141 144 ProSiteProfiles QLQ domain profile. 10 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3141 Ssu-Chr4 79632473 79633052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3141 8 118 GRF Transcription Factor Family AT3G13960 73.874 7.30e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu4g3141 WRC 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3141 - - vun:114166369 250.751