Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3134 ATGTCCTACCCCTCCTCCCTTTTGGTCAATGATCCAACACTACTAAGCCTCCAAACCCTTTTCAATCTTTGCTCAATATCTCACAACATACCTTCTTTCATTACAATGACCATGGAACCAAACCCAACATCAGATCACATTCTGGACTGGTTTGAAGGTTCTGTCTCTTTCTTTCCATTTCCACCTTTCTTGGATGAGCATCCATATAACTCTAGTGACATCCAAGAGTATCAGTTGTGGGATCAAGACATAAGCAGCCAGTACCAAACTGATGCCAATACTAATTCCCTTAATGCCACCAACATTGCTACTAGCACAGTACCCCTTGAGCCTTGTGATTCTCACAGCCAACCACTTTCTGATTTGCCCAAGAAAAGAAATGCCACTGATGAGTCAAGTCTCAAACCACCACAAAACCACAAGCACAAGAAAATCAAGAGCCGTCCAATGAATACTGAAGCAGATAATGGAGATGCTGAAGGGACAACAACAGCTAGAAAATCTAAGAAAGGTGCAGCTAAGGCCACTGGAAATAACAGCAACAACAAGGAAGGTAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGTAGCCATAACTGGTGGAAACCTGAACCGTGTGCAACACCTTTTATATGTTCTCCATGAGTTAGCATCACCTACCGGTGATGCTAACCACAGGCTGGCAGCACATGGTCTTAAAGCACTGACACAACACTTATCATCTTCTCCAACATCCACCTCTTCAGGTTCCATAACTTTTGCATCTACCGAGCCACGGTTCTTCCAAAAGTCATTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCCTTTCCTAACAACATAGCTAATGCTTCCATCCTTCAAGTCCTTGGTGAAGATACAAATAGTTCACGCACCCTTCACATCCTTGACATTGGAGTCTCTCATGGCATGCAATGGCCAACGTTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACCATGGTCACTGCCTCCTCCACTGAAAATGACCAAAACATGGACACCCCATTTTCTATTGGTCCTCCTGGTGATAACTTTTCTTCTAGACTCCTTGGTTTTGCTCAGTCCTTGAACGTTAATTTGCAGATAAACAAGCTAGATAACTGTCCATTACAGACACTGAATGCTCAAAGTGTTGACACCTGCCCGGATGAAATTTTTGTTGTGTGTGCACAGTTTAGGCTGCATCACTTGAATCACAACACCCCTGAAGAAAGAAGTGAGTTTCTGAAGGTGTTGAGGAACATGGAGCCCAAAGGGGTGATACTAAGTGACAACAACATGGAATGTTGTTGCAATTGTTGTGGGGATTTTTCCACTGGATTCTCTCGAAGGGTGGAGTACTTGTGGAGGTTTTTGGACTCAACGAGCTCGGCGTTCAAGGGTCGTGAGAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCTGCGAAGGCATTGACAAACCAGCGTGAGATGAATGAAGGGAAGGGAAAATGGTGTGAGAGAATGAAAGAAGCAGGGTTTGTGGGGGAAATATTTGGAGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGGAAGTATGATAGCAATTGGGAAATGAAAGTGGAAGATGACAATACTAGTGTGGGGCTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCTTTGTGGAAGCTGGATGGGAATGACCAGAGCTCAACATGA 1731 0.4506 MSYPSSLLVNDPTLLSLQTLFNLCSISHNIPSFITMTMEPNPTSDHILDWFEGSVSFFPFPPFLDEHPYNSSDIQEYQLWDQDISSQYQTDANTNSLNATNIATSTVPLEPCDSHSQPLSDLPKKRNATDESSLKPPQNHKHKKIKSRPMNTEADNGDAEGTTTARKSKKGAAKATGNNSNNKEGRWAEQLLNPCAVAITGGNLNRVQHLLYVLHELASPTGDANHRLAAHGLKALTQHLSSSPTSTSSGSITFASTEPRFFQKSLLKFYEVSPWFSFPNNIANASILQVLGEDTNSSRTLHILDIGVSHGMQWPTFLEALSRRPGGPPPLVRLTMVTASSTENDQNMDTPFSIGPPGDNFSSRLLGFAQSLNVNLQINKLDNCPLQTLNAQSVDTCPDEIFVVCAQFRLHHLNHNTPEERSEFLKVLRNMEPKGVILSDNNMECCCNCCGDFSTGFSRRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNQREMNEGKGKWCERMKEAGFVGEIFGEDAIDGGRALLRKYDSNWEMKVEDDNTSVGLWWKGQPVSFCSLWKLDGNDQSST 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3134 576 MobiDBLite consensus disorder prediction 124 138 - -
Ssu4g3134 576 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 39 567 IPR030015 -
Ssu4g3134 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 567 IPR005202 -
Ssu4g3134 576 MobiDBLite consensus disorder prediction 107 185 - -
Ssu4g3134 576 ProSiteProfiles GRAS family profile. 179 567 IPR005202 -
Ssu4g3134 576 Pfam GRAS domain family 189 567 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3134 Ssu-Chr4 79444082 79445812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3134 33 567 GRAS Transcription Factor Family AT3G13840 49.907 1.46e-176 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu4g3134 GRAS 3.7e-73 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3134 - - gmx:100806550 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3134 4 79444082 79445812 Ssu4g3134 4 79444082 79445812 ECH
Ssu4g3134 4 79444082 79445812 Ssu8g0354 8 5760878 5762206 PCT