Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3133 ATGAATGATCAACGACCAATGTCCCATCAGGAGCAAGCCGTAGTGTCCCTTCTCTCCCAGCTCGCCCTTTCCTTCGACGGTGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCGTCCGCACCCTCCTCAAATTCTCCGCCACTTCCGCCGCCCTCCGCAAGCTCCGCCGCGCCCCTTCCCTCTCCGTCTCCGACCTCCGATCCCTCCTCGCCGAGACAGCCTCCGACGCCGACGGAAAGTCCGACCATAGCGAAATCGTAATTGTCCGCGGCACCGTCGACGCCAAGTCCGCCGTCGACGGCACCTGGAAAACCTTGAGACCCGGCGTCTTGGTTTCCCGCGAGTCCGGCGATAAAGGCGTCGTCCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTTATCGATGTTGGATGGCGGCCAAATTCTGAATATGTTGTTGTCAACTTGGATGGCTCAAGACATCCGTTACCTCTGACAACAGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTACAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCGTTGGGGAAGGATATCACAGCTGTTGGCCTTTGCAGCCTAAAAAATGGAATTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATAGTGGATCTTtccatcaaaacaaaaatactgTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTTGGGATCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAACTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGGTGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTCTTCATTCCATGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAGCGTGAACTGGCACCCAAGTGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTATGAATCTTGA 1182 0.4805 MNDQRPMSHQEQAVVSLLSQLALSFDGAVLGFALAYAAVRTLLKFSATSAALRKLRRAPSLSVSDLRSLLAETASDADGKSDHSEIVIVRGTVDAKSAVDGTWKTLRPGVLVSRESGDKGVVLQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGWRPNSEYVVVNLDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLCSLKNGIAEIKSCKDLPYFLSDLSKDQMIVDLSIKTKILFWGGIALGSMSVGILGYAVVRNWNKWKQWKQQRQLQQQRQAVSDVEPQVDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVERELAPKCPVCRQEIRDSVRIYES 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3133 393 Pfam Zinc finger, C3HC4 type (RING finger) 339 386 - -
Ssu4g3133 393 Pfam E3 Ubiquitin ligase 147 293 IPR022170 GO:0004842|GO:0006996|GO:0016567
Ssu4g3133 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 393 IPR013083 -
Ssu4g3133 393 SMART ring_2 341 380 IPR001841 -
Ssu4g3133 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 7 393 IPR044247 GO:0004842
Ssu4g3133 393 SUPERFAMILY RING/U-box 340 386 - -
Ssu4g3133 393 ProSiteProfiles Zinc finger RING-type profile. 341 381 IPR001841 -
Ssu4g3133 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 7 393 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3133 338 390 C3H Transcription Factor Family AT3G06140 39.623 1.65e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3133 K15688 - gmx:100811939 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3133 4 79436912 79442727 Ssu4g3133 4 79436912 79442727 ECH