Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3129 ATGCCTTCGAAGAGGCTTGAATGGAAATCCTTAATACTTGGTTGTTTCAAGGCCAAGAACCCATCCTTGGAAACTCCAAACATAGTTTCCAAGAAGACATCTTCAAGTAGAATCTTCCTCTGTGATTTAAGCGATTATTCATCAGTCTCTATCATGAGTGATTTATCCAATTCTCTCGTGGGGTCAAATCTTCATATTTTCACCTACCAGGAGCTCAAAGAGATTACACACAACTTCAGCAAATCCAACATTCTTGGGGAAGGTGGATTTGGGAAGGTGTATAAAGGGTTTATAGATGACAATCTTAGGCCTGGATTGAAAGCTAAGACTGTGGCAGTTAAGGCCTTAAACTTGGATGGAACACAAGGCCACAGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAGCTTAAGCATCGCCATCTGGTTAACTTAATTGGCTACTGCTGTGAAGATGAGAATAGGCTTCTTGTGTATGAATACATGGAACGGGGCAATCTAGAGGAAAAACTTTTTAAAGGTTATGTAGCAGCTTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCCGCAAAGGGACTTATGTTTCTTCATGAAGAAGAGATACCGGTCATATATAGAGATATCAAGGCCTCAAACATTCTATTGGACGCTGATTACAATGCCAAGCTCTCGGATTTCGGTTTAGCAATAGATGGACCAGACAAAGACCAAACACATATTACAACTCGTGTGATGGGTACACATGGTTATGCTGCTCCTGAGTATATCAATACAGgCCATTTGACAACCATGAGTGATGTATATAGCTTTGGAGTTGTCCTCTTAGAGCTACTCACAGGAAAGAAGTCTGTGGACAAAAAAAGACCCACCAGAGAGCATGATTTGGTGGAATGGGCAAGGCCTTTGTTGAAGGATTCCCATAAACTTGAAAGAATAATGGACCCAAGACTTGAGGATCAGTACTCTACTGAAGGGGCTAGAAAGTTTGCAGCCTTGGCTTATCAATGTCTGAGCCATCATGCAAAGAGTAGGCCCACTATGCGAACCGTGGTTAAGACCTTAGAGCCTCTCTTGGAATTGAAAGATATCCCAGTTGGCCCTTTTGTCTATGTGGTGCCCAGTGAAGGAGACTCACCCAAAGTGAATGAAAAAGTAACAGAAAATGACCATGATGAGATCAACCAAGGTGAGTTAAaacccaaagaagaagaaaagggagacaaaaaggaaaagggtCACCACCGGCCAAGAAAAAGTCGTCGCAATAGACGTCGTGTTAAGCCATTGAGGTCTCGTGCTGTTTACTCcgacactgctctgtataaaaCTCTTGGTACCAATCTGTACTCTCCCAAACCAGCACCATAA 1374 0.4083 MPSKRLEWKSLILGCFKAKNPSLETPNIVSKKTSSSRIFLCDLSDYSSVSIMSDLSNSLVGSNLHIFTYQELKEITHNFSKSNILGEGGFGKVYKGFIDDNLRPGLKAKTVAVKALNLDGTQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDENRLLVYEYMERGNLEEKLFKGYVAALPWLTRIKIAIGAAKGLMFLHEEEIPVIYRDIKASNILLDADYNAKLSDFGLAIDGPDKDQTHITTRVMGTHGYAAPEYINTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPTREHDLVEWARPLLKDSHKLERIMDPRLEDQYSTEGARKFAALAYQCLSHHAKSRPTMRTVVKTLEPLLELKDIPVGPFVYVVPSEGDSPKVNEKVTENDHDEINQGELKPKEEEKGDKKEKGHHRPRKSRRNRRRVKPLRSRAVYSDTALYKTLGTNLYSPKPAP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3129 457 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3129 457 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Ssu4g3129 457 SUPERFAMILY Protein kinase-like (PK-like) 54 356 IPR011009 -
Ssu4g3129 457 Pfam Protein tyrosine and serine/threonine kinase 82 356 IPR001245 GO:0004672|GO:0006468
Ssu4g3129 457 SMART serkin_6 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3129 457 MobiDBLite consensus disorder prediction 413 431 - -
Ssu4g3129 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Ssu4g3129 457 Gene3D Transferase(Phosphotransferase) domain 1 162 365 - -
Ssu4g3129 457 PANTHER OS01G0588500 PROTEIN-RELATED 28 416 - -
Ssu4g3129 457 ProSitePatterns Protein kinases ATP-binding region signature. 85 114 IPR017441 GO:0005524
Ssu4g3129 457 PANTHER BNAA02G16030D PROTEIN 28 416 - -
Ssu4g3129 457 MobiDBLite consensus disorder prediction 376 436 - -
Ssu4g3129 457 MobiDBLite consensus disorder prediction 382 412 - -
Ssu4g3129 457 CDD STKc_IRAK 85 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3129 Ssu-Chr4 79347237 79349045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3129 65 417 Glycoside Hydrolase AT3G07070 45.225 2.63e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu4g3129 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3129 - - gmx:100790454 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0585 6 9138974 9141216 Ssu4g3129 4 79347237 79349045 ECH
Ssu4g3129 4 79347237 79349045 Ssu4g3129 4 79347237 79349045 ECH
Ssu4g3129 4 79347237 79349045 Ssu5g0507 5 10880009 10882217 ECH