Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3111 ATGGCCATAGCTCCGGCAATCCTCCAGCCAACTCTCATCATCATCGTCACTTTGCCTGTGATATATTCCATGACGGAAGCTGAAGCTTTGGTGACTCTCAAAAACTCATTCTCCAACGCTGAAATTCTGGATGGTTGGGTGGCTGGTTCCTCACCTTGTAATGAAGACGATCAGTGGGAAGGTGTTGTTTGCAACAATGGCCTTGTCACGGGGCTTCGCCTTGGGGGAATAGGGTTAATAGGGGAAATAGATATTGAGGCATTGCTTGAACTCAAGGGTCTTCGAACTATTAGCCTTAACAACAATTCCTTCTCGGGTTCCATGCCAGAGTTCAACCGAGTAGGGTTCTTGAAAGCCTTATATTTGCAAGGAAACAAGTTTTCTGGGGATATTCCTCCGGAATACTTCCTCAGAATGAGGTCTTTGAAGAAATTGTGGCTCTCTGATAACCAATTCACGGGGCATATTCCAACATCATTGGCCGAGGTTCCTCAGCTTATGGAGTTGCGTCTTGAGAACAACCAGTTTAGTGGAAGTATTCCTGAGCTGAATAACCCATCATTGGTGAAACTCGATCTTTCCAACAACAAATTGGAAGGTGAAGTTCCAGCTAGTTTGTTGAAATTCAATGAGGGCTCGTTTGCAGGGAATTCTGGTCTTTGTGGTGAGAAGTTCGGCAGATCATGTGAAAAGACTGTGGAGAGTCCAAGTCCCATTGATGCACAAAATAATAGTGGTAATGTGGCTGTGTCAAGTAGTGGTGTGAGTAGTAGCTCACTGGAGATTGCTGGCATTATAGTAGCGAGTGTGGTGCTTGTCTCACTAGTTGTCTTTTTTATTGTGAGATCAAGGCGAAAGAAGGAGGAGGAGAGTTTTGATATACTTGGAGAAGAAGTTAATGAAGGTGCAGTGGAAGTTCAAGTGACTGCACCAGTGAAAAGGGATTCGGGTACAAGTACATCAATGAGAAAAGCATCGTCGTCCAGCAGAAGGGCATCTAGTGCTCAAGCTAAAAACGTTGGAGAACTTGTGATGGTGAATGACGAGAAGGGTGTGTTTGGGTTGCCAGATTTGATGAGGGCAGCCGCGGAAGTGCTGGGAAATGGGGGCTTTGGATCTTCTTACAAAGCCGTGCTGGCTAATGgagtggcagtggtggtgaaAAGGACCAGAGAGATGAATGTTTTGGAGAAAGATGGTTTTGACGCAGAGATGAGGAAGCTTGCAAATCTAAAACACTGGAATTTATTGACCCCTTTAGCGTATCATTTCAGAAAAGATGAGAAGCTAGTGATCTTTGAGTATGTTCCCAGAGGCAGCCTACTGTTTTCACTGCATGGTGATAGGGGACCATCGCATGCTGAGCTGGATTGGCCAGCTCGTTTGAAGATTGTACGTGGAATCGCTGAAGGGATGCGTTACCTTTACACAGAACTTGCTTCCTCTGATCTCCCTCATGGCAATCTCAAGTCCAGCAATGTTCTCCTTGGACCAGACAATGAACCAATGCTTGTAGATTACGGGTTTAGCCACATGGTTAACCCTTCCAGCGTTGCACAGACACTATTTGCTTACAAGGCACCTGAGGCAGCACAACATGGCCAAGTTTCACGTAGCTGCGATGTTTACTGTCTTGGGGTTGTCATACTTGAGATACTCACTGGGAAATTCCCTTCTCAATATCTTGGCAATGGAAAGGGTGGAACTGATGTGGTGCAATGGGTTGAAACCGCGATTTCTGAGGGAAAGGAATCAGAACTGCTTGATCCTGAAATTGCAAGCTCTACGAATTCACTTGGTGAGATGGAGCAACTCCTCCGCATTGGTGCTGCTTGCACTGAAAGCAAACCTCAGCAGCGGTTAGACATGGTGGAAGCCATTAGAAGGATAGAGGAGATAAAAACCGAGGGAGGCTAA 1917 0.4538 MAIAPAILQPTLIIIVTLPVIYSMTEAEALVTLKNSFSNAEILDGWVAGSSPCNEDDQWEGVVCNNGLVTGLRLGGIGLIGEIDIEALLELKGLRTISLNNNSFSGSMPEFNRVGFLKALYLQGNKFSGDIPPEYFLRMRSLKKLWLSDNQFTGHIPTSLAEVPQLMELRLENNQFSGSIPELNNPSLVKLDLSNNKLEGEVPASLLKFNEGSFAGNSGLCGEKFGRSCEKTVESPSPIDAQNNSGNVAVSSSGVSSSSLEIAGIIVASVVLVSLVVFFIVRSRRKKEEESFDILGEEVNEGAVEVQVTAPVKRDSGTSTSMRKASSSSRRASSAQAKNVGELVMVNDEKGVFGLPDLMRAAAEVLGNGGFGSSYKAVLANGVAVVVKRTREMNVLEKDGFDAEMRKLANLKHWNLLTPLAYHFRKDEKLVIFEYVPRGSLLFSLHGDRGPSHAELDWPARLKIVRGIAEGMRYLYTELASSDLPHGNLKSSNVLLGPDNEPMLVDYGFSHMVNPSSVAQTLFAYKAPEAAQHGQVSRSCDVYCLGVVILEILTGKFPSQYLGNGKGGTDVVQWVETAISEGKESELLDPEIASSTNSLGEMEQLLRIGAACTESKPQQRLDMVEAIRRIEEIKTEGG 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3111 638 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Ssu4g3111 638 SUPERFAMILY Protein kinase-like (PK-like) 364 630 IPR011009 -
Ssu4g3111 638 Gene3D Ribonuclease Inhibitor 20 112 IPR032675 -
Ssu4g3111 638 Gene3D Ribonuclease Inhibitor 113 231 IPR032675 -
Ssu4g3111 638 Pfam Protein kinase domain 364 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3111 638 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 636 - -
Ssu4g3111 638 Gene3D Transferase(Phosphotransferase) domain 1 436 637 - -
Ssu4g3111 638 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515
Ssu4g3111 638 MobiDBLite consensus disorder prediction 312 336 - -
Ssu4g3111 638 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Ssu4g3111 638 MobiDBLite consensus disorder prediction 311 336 - -
Ssu4g3111 638 ProSiteProfiles Protein kinase domain profile. 360 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3111 638 SUPERFAMILY L domain-like 51 208 - -
Ssu4g3111 638 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 5 636 - -
Ssu4g3111 638 Gene3D Phosphorylase Kinase; domain 1 324 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3111 Ssu-Chr4 79036955 79039530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3111 12 633 Receptor kinase-like Gene Family AT3G42880 46.395 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu4g3111 Pkinase 1.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3111 - - gmx:100809208 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3111 4 79036955 79039530 Ssu4g3111 4 79036955 79039530 ECH