Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3110 ATGTCAAGTTTCCTCAACACGGTGTCGGAAGGCCGGAGGTCCGGCAAGGCACCGGAAAAATCCACTTTTTCCCAGACTTGCAGCCTCTTGAGCCAGCTCTTGAAGGAGAAACGCGCTTCTGGAGATTCCACCCTTGGAATGGGTGGGAAAATGGAACCTAGAGCGAGCACGAAGGATTTCTTTGGCACCCTGCAAAACTCAGATGGGGCTTTGAGACTAAACGCTTCTGCCATGGATTTTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATGTTAGGTCACCGGGACCTGAATCTCCCCAATTGACAATATTCTATGCTGGAAAAATGTTGGTATTTGATGCTTTTCCTCCTGAGAAGGCAACGGAGGTCATGGAGTTGGCCACCAAGTTAGCTTCAGACAGTTCCGGTGCCGCCGAAGAAAGTCCCCCTAGTGCTCCGGCTACCACTGAAAATTCGACTGTGTCGAAAGTGCCTCAAACAAACACTTCCTCAGAAACCCCAAGAGCAGGAAACCAAGGGGTTGGTTCAGATATGAGGTATCCAAGGAGAGCTTCACTTCTAAAATTtcttgagaaaagaaaagagagGGTTAATGCTAGAGGACCTTACCAGATTAACAACCACAAGCCAGAGGCAAGCAGTTCAGGGGGTGAACCTGAAGATCAGTGTTCCAAACAGTTTGACCTTAACTTGTAG 708 0.4732 MSSFLNTVSEGRRSGKAPEKSTFSQTCSLLSQLLKEKRASGDSTLGMGGKMEPRASTKDFFGTLQNSDGALRLNASAMDFLPQLVENPCIKKSNVRSPGPESPQLTIFYAGKMLVFDAFPPEKATEVMELATKLASDSSGAAEESPPSAPATTENSTVSKVPQTNTSSETPRAGNQGVGSDMRYPRRASLLKFLEKRKERVNARGPYQINNHKPEASSSGGEPEDQCSKQFDLNL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3110 235 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g3110 235 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Ssu4g3110 235 MobiDBLite consensus disorder prediction 135 235 - -
Ssu4g3110 235 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 229 IPR040390 -
Ssu4g3110 235 MobiDBLite consensus disorder prediction 138 175 - -
Ssu4g3110 235 SMART tify_2 98 133 IPR010399 -
Ssu4g3110 235 MobiDBLite consensus disorder prediction 188 203 - -
Ssu4g3110 235 MobiDBLite consensus disorder prediction 211 235 - -
Ssu4g3110 235 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 229 - -
Ssu4g3110 235 Pfam Jas motif 186 208 IPR018467 -
Ssu4g3110 235 Pfam tify domain 100 131 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3110 Ssu-Chr4 78996404 78998495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3110 8 209 Tify Gene Family AT1G19180 36.207 9.54e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu4g3110 tify 3.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3110 K13464 - gmx:100778559 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3110 4 78996404 78998495 Ssu4g3110 4 78996404 78998495 ECH