Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3109 atgCAGAATCACAGGCTgaagcagcagcagcagcagcaacaacaagCTCTGATGCAGCAAGCTCTTCTTCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCACTTTTGCAAGAAGTTTTTGCTGGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAagTCATCCTATGGATTCATTCATTACTTTGATCGTAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAGGTTAATTGGGCATATGCTAGTGGTCAGAGAGAGGATACGTCAGGTCATTACAACATATTTGTTGGTGATCTAAGTCCTGAGGTTACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACCCAAGTTGTTCAGACGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGCGCTATAAATGATCTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACGAAAGGTGCTGCTGGTAATGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACGTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTACACTACTGTTTATGTGGGTAATCTTGCTTCAGAGGTAACACAAGTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGTGTTCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCGCCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGTCTGTCCGCAACTGATCTTTTGGCGTATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAAGCAGCTATTGGAGCCAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1266 0.4534 MQNHRLKQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAAGNEEKQNSDAKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLASEVTQVDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3109 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 338 IPR000504 GO:0003723
Ssu4g3109 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 402 - -
Ssu4g3109 421 CDD RRM3_TIA1_like 263 338 - -
Ssu4g3109 421 Gene3D - 1 138 IPR012677 -
Ssu4g3109 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Ssu4g3109 421 Gene3D - 243 342 IPR012677 -
Ssu4g3109 421 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 8 402 - -
Ssu4g3109 421 MobiDBLite consensus disorder prediction 223 262 - -
Ssu4g3109 421 SMART rrm1_1 58 127 IPR000504 GO:0003723
Ssu4g3109 421 SMART rrm1_1 264 334 IPR000504 GO:0003723
Ssu4g3109 421 SMART rrm1_1 143 216 IPR000504 GO:0003723
Ssu4g3109 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Ssu4g3109 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 324 IPR000504 GO:0003723
Ssu4g3109 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Ssu4g3109 421 MobiDBLite consensus disorder prediction 222 262 - -
Ssu4g3109 421 CDD RRM1_TIA1_like 59 129 - -
Ssu4g3109 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Ssu4g3109 421 CDD RRM2_PUB1 143 217 - -
Ssu4g3109 421 SUPERFAMILY RNA-binding domain, RBD 55 221 IPR035979 GO:0003676
Ssu4g3109 421 Coils Coil 6 26 - -
Ssu4g3109 421 SUPERFAMILY RNA-binding domain, RBD 253 345 IPR035979 GO:0003676
Ssu4g3109 421 Gene3D - 139 242 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3109 Ssu-Chr4 78950766 78955907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3109 140 331 Eukaryotic Initiation Factors Gene Family AT1G49760 28.205 2.91e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3109 K13201 - gmx:100781227 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3109 4 78950766 78955907 Ssu4g3109 4 78950766 78955907 ECH