Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3103 ATGGCCACCAAAGATTCCCCTCCGGAGCTCCACGAAATCACCATCGATTCTGAAGGATCCGACCCGGGTTCCGACTGGGACGATTCGGAGGAAGACCCCGATTTCGAGGTGCTCGAAGAAACTCATACCAATTTCTCAAACCTTTCACTTAAGCACAAACCAAAAGCGCGCGTTGTCGAAGATAAGGGTCTAGGTGAGGAGGTGACTGCATCTGTTCACGATGGGGACAATTTTGAGAAAGTTCAGAAACTAATCGAAgCGGGACTGTTGGAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTGAGGCTAACTGGAAACAAGGACACACTTATACAACGCATAAAGGAGCATTTAGAGATTTTAAATGGAGGGGAGAAAAAGTATCCACCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAACAAAATGTCTACGAAATGTTCAACATAGCGTCCAGAAGTGCCAGTGGTCCATCTTGTGGCAAAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAACCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAGGTTGAAGACTTTGAGACAGaaatgggAGGATGAAGCAAAAAGGCAGAAAATGTTGATGGAAAAACACTCAAGGGGATCTCTTGCTAGGGCAGACAGAGAAGCAAGGATACAGGaaaaggagaagaggaaaaaaattatggaaaatagGGTCTCCAAAAAGGATTCAGCAAGGAACCAATGTAAATCACATTCACACATTACAAGGTCACAATATCAACCTCAAGAAACAAATGTACCCATTAATCCAGAAAAGCCAGAATTTCCATCTCAAAATTCAGGTTTACCTGCCCACATAAGGAAAGAAACATCCTCTATTGTGAATAAACCAGCAGCTGTAACCGGACAATTGGAAACTTCAGGAAGAGCATCGTTTAATGTTCACCATATACATAATCAGCAAGCTTGGAACCGCCCAGCTGACTGTAGGAGTACTTCTAATATGAGGGGAGCTGAACTTGGTGCAAACTACAATTATGCTGAGACAACTGGATTTACAGGGTGGACTCATCATAGGGTGCCTTTGGCAAATGCAAACCACCCTCACCCGTTGATGCCCAGCAGAGAAAGCTATAAGCAAAACCAGTTGTGTAGACATTATTCCCGTGGGAGGTGCTATTTTGGGGACAACTGCAAATTCTTACATGATTTGAGAGACAAAGGGAACGcgtga 1347 0.4232 MATKDSPPELHEITIDSEGSDPGSDWDDSEEDPDFEVLEETHTNFSNLSLKHKPKARVVEDKGLGEEVTASVHDGDNFEKVQKLIEAGLLEKLKVDECKLYLRKNGLRLTGNKDTLIQRIKEHLEILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPSCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAKRQKMLMEKHSRGSLARADREARIQEKEKRKKIMENRVSKKDSARNQCKSHSHITRSQYQPQETNVPINPEKPEFPSQNSGLPAHIRKETSSIVNKPAAVTGQLETSGRASFNVHHIHNQQAWNRPADCRSTSNMRGAELGANYNYAETTGFTGWTHHRVPLANANHPHPLMPSRESYKQNQLCRHYSRGRCYFGDNCKFLHDLRDKGNA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3103 448 MobiDBLite consensus disorder prediction 246 302 - -
Ssu4g3103 448 MobiDBLite consensus disorder prediction 246 287 - -
Ssu4g3103 448 SMART sap_9 90 124 IPR003034 -
Ssu4g3103 448 SUPERFAMILY SAP domain 79 125 IPR036361 -
Ssu4g3103 448 Coils Coil 255 275 - -
Ssu4g3103 448 MobiDBLite consensus disorder prediction 1 33 - -
Ssu4g3103 448 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 5 444 - -
Ssu4g3103 448 MobiDBLite consensus disorder prediction 288 302 - -
Ssu4g3103 448 Gene3D SAP domain 77 136 IPR036361 -
Ssu4g3103 448 Pfam SAP domain 90 124 IPR003034 -
Ssu4g3103 448 Gene3D - 409 447 - -
Ssu4g3103 448 ProSiteProfiles SAP motif profile. 90 124 IPR003034 -
Ssu4g3103 448 SMART c3hfinal6 417 442 IPR000571 GO:0046872
Ssu4g3103 448 ProSiteProfiles Zinc finger C3H1-type profile. 416 443 IPR000571 GO:0046872
Ssu4g3103 448 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 5 444 IPR045124 GO:0003723|GO:0045892
Ssu4g3103 448 SUPERFAMILY CCCH zinc finger 417 441 IPR036855 GO:0046872
Ssu4g3103 448 Pfam CCCH-type zinc finger 421 441 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3103 Ssu-Chr4 78875109 78878664 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu4g3103 SAP 8.6e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3103 - - gmx:100815642 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3103 4 78875109 78878664 Ssu4g3103 4 78875109 78878664 ECH