Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g3100 | ATGGCTGATTCTTCATCCTTTGAGGGTGAATACCACTCAAGCCATCAGAGACACTATCCAACGCCAGTGAGTAATCAAAGTTTGTATGGCTCGGGCTCTTTCATACCATCCAGCTCTCAAAGCAATGCCACTTCCAGAACCAGAAGAGCGCGCCGCACCCGAGTTCCTGCCACACCCTTTGCTTCAGATGATGACCATTCATGGCAAGGAGAGGTTTCGTGGAAGTTTCAGGCCACCGGGTGGCGTGAGTATAGCACCAACGTTGGTTCTGTTCTGAGTCCATGGCCAGCTGGTTCCCCTTCTGATCGCAGCCGTGTATTTCGTCGATCAGCCAATGACTACTACCTTTCTAGAACAAGTAGATTCAGAGGCCTCACAAGCTCTTCTTATGAACATTCTGGCTATGGTAGAGTTGAACTTCAAAGCTATGTTGCTAGGGACAATGATCATAGTTACTTTGACCAGCACGGTCAGCCTCATGGATTGTCAAAATTGGGGATCATCCAAGAGAGGAGTAGTGGAAAAGGGAAGAGTAGTCCATTGGCTGAGGAAGATGAGCTTAGTATGATAGATTATAGCATAACAGAAGATCCTGTTATTTCACCCAATAGGAACGGTCATGGTCTTGAATTGCCATATTTTAAACATGGTCATGGTGATTATGGTGGGAATTATTATGTTGGTCATGGACTACCATCACATGGTAGCCAAATTTATGGAAGTGGTGGTGGTTATAGTCACCATGACATTGACAAGTTTTCAGGATAtgatgaagaaggagaggagGATGTGGATGAGGAAGATGCAAGGCCTCCAAAGACTGTTGGGCTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGGTGCTTGTGTTTGTGGGGTGTTTAGGGGCTCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTTGGAAACTTGGTCAATAAGATTTCAGAAGAAGCTGACAAGGACAAACACCAGATGATGAAGGATGTAGAGAAGATATGCATGTTTATGGCCGGGCTAGCTGCAGTGGTGGTAGTTGGAGCATATTTGCAGATCACATGTTGGAGGTTAGTGGGGGAGCGATCTGCTCAAAGAATCAGAACCGAGTATCTAAGGGCTGTTCTTCGACAGGACATTACTTTCTTTGATACGGATATCAACACTGGTGATATTATGCATGGAATAGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTCATTCATCATGTATTTACATTCATATGTGGGTACGCAGTTGGGTTTAGAAGATCATGGAAAGTCTCTTTGGTGGTATTCTCAGTCACTCCATTGACAATGTTCTGTGGCATGGCTTACAAAGCACTTTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGGCCATCAGTTCAATTAGGACAGTGTTTTCATTTGTTGCAGAAAGCCAGTTGGCTGGAAAATATGCTGAACTACTGCAAAAATCAGCTCCAATAGGGGCCAAAGTTGGTTTTGCTAAAGGTATAGGCATGGGTGTGATCTACTTAATAACCTATTCAACATGGGCACTGGCTTTCTGGTATGGCTCTATATTAATTGCTAGGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTAGGGGGAAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGGACTGTTGCAGCAAGCCGTGTATTCTTTATTATAGAGAGAATCCCTGAGATTGATCCTTATAGCCCTGAGGGTAGGAAGCTTTCTGTTATTCGTGGAAGgattgagttaaaaagtgttaGTTTTGCATACCCATCTCGTCCTGATTCTCTGATACTTCATTCCCTTAACTTGGTATTACCATCTTCAAAAACTGTGGCATTGGTTGGTGCCAGTGGTGGGGGAAAGTCCACTGTCTTTGCTCTCGTAGAGAGGTTTTATGACCCTATTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGTAATCAGATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACCTCTATACTGGAAAACGTGATGATGGGGAAAGATAATGCCACCAAGGAAGAGGCAATTGCTGCTTGCATTGCTGCTGATGCTCACAGCTTCATCTCTAGCCTTCCCCTAAGCTATGACACTCAGGTAGGGGACAGGGGTACAAAACTCTCAGGTGGTCAAAAGCAGAGAATTGCATTGGCTCGAGCAATGATCAAGGATCCTAAAATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCCGAGTCAGAGTCTGCGGTCCAACGGGCTATTGACAAGATTTCTGCTGGCCGAACAACCATTGTGATTGCTCACAGGATAGCAACAGTGAAGAATGCTCATACCATTGTGGTTCTTGAACACGGTTCTGTCACTGAGATCGGTGACCATCGCCAGCTTATGGCAAAAGCAGGAGCATACTACAACCTTGTCAAGCTTGCTACCGAAGCCATTTCAAAACCTCAAGCTATAGAAAATGGCATGCAAAAAGCCAATGATTTATCCATCTATGATAAATCTATTCCTGGTTTATCAGGATCAAGATTTGTAGTTGATATCCCAAGGcctaaaaacttaaaatctaCGCAGGAGGAGAAACAAGAAGACATGGAAGATAAGCAAGTCAAAAAGGCAAGAAAATACAGACTTTCTGAAGTATGGAAATTGCAAAAGCCTGAGCTTATGATGCTATTTTCAGGACTTCTTCTGGGAATGTTTGCTGGTGCTATTCTGTCTCTTTTCCCATTGGTTTTAGGCATATCCTTGGGAGTATATTTTGGCCATGACACTCATAAGATGAAAAGAGATGTTGGGCACCTTTGTTTAGCACTTGTTGGCCTTGGATTTGGTTGCATACTTTCCATGACAGGACAGCAAGGTTTGTGTGGTTGGGCTGGATCAAAGCTGACACAAAGGGTTAGAGACCTCTTGTTTCAGTCCATACTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCCACAGGAGTGTTGGTGTCAAGGCTCTCATTAGACTGTGTTAGTTTTCGTTCAGTACTTGGTGACAGATTCTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTTGGTGTGTCCTTTGCCTTCAGTTGGAGACTAACCCTTGTGGCAGCTGCTGTAACTCCTTTGACACTTGGTGCAAGCTACATAAGCTTGATCATAAACATTGGGCCACAAGTGGATAATGACTCTTATGCCAAAGCTAGTAACATTGCTTCTGGTGCAGTGTCAAACATAAGGACAGTTACTACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCCCTGTCAGAACCTAGGAGAAAATCATTAAGAAGTTCACAAATTCAAGGTCTTATGTTTGGATTCTTTCAAGGTGCCATGTATGGAGCATACACCTTAACTCTTTGGTTTGGTGCATACCTTGTCCAACATGACAAGGCAAAACTTGAAGATGTGTTTAAGATTTTTCTCATTCTTGTTCTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTGGCACCAGATACTTCTATGGCGACTACAGCAATTCCTGCAGTTCAAGATATCATAAATCGTAGGCCACTGATTGACAATGATAGAACAAAAGGTAGGAAAGCAGCAAGATCAAAGCCGTTCAACATAGAATTCAAGATGGTGACATTTGCATACCCATCTAGGTCAGAGGTGACTGTGTTGAGGGACTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCTTGGTGGGACCAAGTGGATCAGGGAAGTCAACGGTCATATGGTTGACTCAGAGGTTCTATGATCCAGATCAAGGAAAGGTGATGATGAGGGGTATAGATTTGAGGGAGATTGATGTCAAGTGGTTGAGGAGGCAAATAGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGACAATATTGCATTTGGGGACCCAAATGCTTCATGGACTGAAATTGAAGAGGTTGCAAAGGAAGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAAGGTTATGAAACCCAGGTTGGTGAAAGCGGGGTCCAGTTATCAGGTGGCCAGAAACAAAGAATTGCTATAGCAAGGGCCATATTGAAGAAATCAAGGGTGCTTTTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAGATGCCCTCAAGAATGTTACTAGAGAGGCAACAACCATAATAGTTGCTCACCGTCTTTCCACAATCAGAGAAGCTGACAAGATCGCAGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCAAGTCAAAATGGTTTGTATGCTAGTCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA | 4521 | 0.4349 | MADSSSFEGEYHSSHQRHYPTPVSNQSLYGSGSFIPSSSQSNATSRTRRARRTRVPATPFASDDDHSWQGEVSWKFQATGWREYSTNVGSVLSPWPAGSPSDRSRVFRRSANDYYLSRTSRFRGLTSSSYEHSGYGRVELQSYVARDNDHSYFDQHGQPHGLSKLGIIQERSSGKGKSSPLAEEDELSMIDYSITEDPVISPNRNGHGLELPYFKHGHGDYGGNYYVGHGLPSHGSQIYGSGGGYSHHDIDKFSGYDEEGEEDVDEEDARPPKTVGLFSLFRYSTKWDWVLVFVGCLGALINGGSLPWYSYLFGNLVNKISEEADKDKHQMMKDVEKICMFMAGLAAVVVVGAYLQITCWRLVGERSAQRIRTEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFRRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLAGKYAELLQKSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSILIARNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFFIIERIPEIDPYSPEGRKLSVIRGRIELKSVSFAYPSRPDSLILHSLNLVLPSSKTVALVGASGGGKSTVFALVERFYDPIEGIITLDGHDLRTLQVKWLRNQIGMVGQEPILFATSILENVMMGKDNATKEEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLEHGSVTEIGDHRQLMAKAGAYYNLVKLATEAISKPQAIENGMQKANDLSIYDKSIPGLSGSRFVVDIPRPKNLKSTQEEKQEDMEDKQVKKARKYRLSEVWKLQKPELMMLFSGLLLGMFAGAILSLFPLVLGISLGVYFGHDTHKMKRDVGHLCLALVGLGFGCILSMTGQQGLCGWAGSKLTQRVRDLLFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFSWRLTLVAAAVTPLTLGASYISLIINIGPQVDNDSYAKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKSLRSSQIQGLMFGFFQGAMYGAYTLTLWFGAYLVQHDKAKLEDVFKIFLILVLSSFSVGQLAGLAPDTSMATTAIPAVQDIINRRPLIDNDRTKGRKAARSKPFNIEFKMVTFAYPSRSEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMRGIDLREIDVKWLRRQIALVGQEPALFAGSIRDNIAFGDPNASWTEIEEVAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQDALKNVTREATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASSQNGLYASLVRAETEANAFS | 1506 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g3100 | 1506 | Gene3D | ABC transporter type 1, transmembrane domain | 1226 | 1503 | IPR036640 | GO:0005524|GO:0016021 | |
Ssu4g3100 | 1506 | Pfam | ABC transporter | 635 | 784 | IPR003439 | GO:0005524 | |
Ssu4g3100 | 1506 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 293 | 582 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Ssu4g3100 | 1506 | SUPERFAMILY | ABC transporter transmembrane region | 273 | 602 | IPR036640 | GO:0005524|GO:0016021 | |
Ssu4g3100 | 1506 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1260 | 1496 | IPR003439 | GO:0005524 | |
Ssu4g3100 | 1506 | SMART | AAA_5 | 1287 | 1473 | IPR003593 | - | |
Ssu4g3100 | 1506 | SMART | AAA_5 | 644 | 845 | IPR003593 | - | |
Ssu4g3100 | 1506 | Gene3D | - | 607 | 855 | IPR027417 | - | |
Ssu4g3100 | 1506 | Gene3D | - | 1249 | 1500 | IPR027417 | - | |
Ssu4g3100 | 1506 | Pfam | ABC transporter transmembrane region | 292 | 564 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Ssu4g3100 | 1506 | Pfam | ABC transporter transmembrane region | 939 | 1208 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Ssu4g3100 | 1506 | Gene3D | ABC transporter type 1, transmembrane domain | 279 | 860 | IPR036640 | GO:0005524|GO:0016021 | |
Ssu4g3100 | 1506 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 608 | 853 | IPR027417 | - | |
Ssu4g3100 | 1506 | ProSitePatterns | ABC transporters family signature. | 1399 | 1413 | IPR017871 | GO:0005524 | |
Ssu4g3100 | 1506 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 293 | 590 | - | - | |
Ssu4g3100 | 1506 | CDD | ABC_MTABC3_MDL1_MDL2 | 1260 | 1498 | - | - | |
Ssu4g3100 | 1506 | SUPERFAMILY | ABC transporter transmembrane region | 926 | 1243 | IPR036640 | GO:0005524|GO:0016021 | |
Ssu4g3100 | 1506 | CDD | ABC_MTABC3_MDL1_MDL2 | 617 | 854 | - | - | |
Ssu4g3100 | 1506 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Ssu4g3100 | 1506 | MobiDBLite | consensus disorder prediction | 17 | 46 | - | - | |
Ssu4g3100 | 1506 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 927 | 1242 | - | - | |
Ssu4g3100 | 1506 | Pfam | ABC transporter | 1279 | 1426 | IPR003439 | GO:0005524 | |
Ssu4g3100 | 1506 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 940 | 1224 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Ssu4g3100 | 1506 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1256 | 1497 | IPR027417 | - | |
Ssu4g3100 | 1506 | ProSitePatterns | ABC transporters family signature. | 756 | 770 | IPR017871 | GO:0005524 | |
Ssu4g3100 | 1506 | Gene3D | ABC transporter type 1, transmembrane domain | 917 | 1225 | IPR036640 | GO:0005524|GO:0016021 | |
Ssu4g3100 | 1506 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 617 | 853 | IPR003439 | GO:0005524 | |
Ssu4g3100 | 1506 | PANTHER | - | 97 | 1505 | - | - | |
Ssu4g3100 | 1506 | PANTHER | ABC TRANSPORTER B FAMILY | 97 | 1505 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g3100 | Ssu-Chr4 | 78835558 | 78843372 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g3100 | 968 | 1503 | Calmodulin-binding Proteins | AT2G36910 | 37.546 | 3.78e-104 | 361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g3100 | K05658 | - | gmx:100816700 | 2593.53 |