Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3100 ATGGCTGATTCTTCATCCTTTGAGGGTGAATACCACTCAAGCCATCAGAGACACTATCCAACGCCAGTGAGTAATCAAAGTTTGTATGGCTCGGGCTCTTTCATACCATCCAGCTCTCAAAGCAATGCCACTTCCAGAACCAGAAGAGCGCGCCGCACCCGAGTTCCTGCCACACCCTTTGCTTCAGATGATGACCATTCATGGCAAGGAGAGGTTTCGTGGAAGTTTCAGGCCACCGGGTGGCGTGAGTATAGCACCAACGTTGGTTCTGTTCTGAGTCCATGGCCAGCTGGTTCCCCTTCTGATCGCAGCCGTGTATTTCGTCGATCAGCCAATGACTACTACCTTTCTAGAACAAGTAGATTCAGAGGCCTCACAAGCTCTTCTTATGAACATTCTGGCTATGGTAGAGTTGAACTTCAAAGCTATGTTGCTAGGGACAATGATCATAGTTACTTTGACCAGCACGGTCAGCCTCATGGATTGTCAAAATTGGGGATCATCCAAGAGAGGAGTAGTGGAAAAGGGAAGAGTAGTCCATTGGCTGAGGAAGATGAGCTTAGTATGATAGATTATAGCATAACAGAAGATCCTGTTATTTCACCCAATAGGAACGGTCATGGTCTTGAATTGCCATATTTTAAACATGGTCATGGTGATTATGGTGGGAATTATTATGTTGGTCATGGACTACCATCACATGGTAGCCAAATTTATGGAAGTGGTGGTGGTTATAGTCACCATGACATTGACAAGTTTTCAGGATAtgatgaagaaggagaggagGATGTGGATGAGGAAGATGCAAGGCCTCCAAAGACTGTTGGGCTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGGTGCTTGTGTTTGTGGGGTGTTTAGGGGCTCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTTGGAAACTTGGTCAATAAGATTTCAGAAGAAGCTGACAAGGACAAACACCAGATGATGAAGGATGTAGAGAAGATATGCATGTTTATGGCCGGGCTAGCTGCAGTGGTGGTAGTTGGAGCATATTTGCAGATCACATGTTGGAGGTTAGTGGGGGAGCGATCTGCTCAAAGAATCAGAACCGAGTATCTAAGGGCTGTTCTTCGACAGGACATTACTTTCTTTGATACGGATATCAACACTGGTGATATTATGCATGGAATAGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTCATTCATCATGTATTTACATTCATATGTGGGTACGCAGTTGGGTTTAGAAGATCATGGAAAGTCTCTTTGGTGGTATTCTCAGTCACTCCATTGACAATGTTCTGTGGCATGGCTTACAAAGCACTTTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGGCCATCAGTTCAATTAGGACAGTGTTTTCATTTGTTGCAGAAAGCCAGTTGGCTGGAAAATATGCTGAACTACTGCAAAAATCAGCTCCAATAGGGGCCAAAGTTGGTTTTGCTAAAGGTATAGGCATGGGTGTGATCTACTTAATAACCTATTCAACATGGGCACTGGCTTTCTGGTATGGCTCTATATTAATTGCTAGGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTAGGGGGAAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGGACTGTTGCAGCAAGCCGTGTATTCTTTATTATAGAGAGAATCCCTGAGATTGATCCTTATAGCCCTGAGGGTAGGAAGCTTTCTGTTATTCGTGGAAGgattgagttaaaaagtgttaGTTTTGCATACCCATCTCGTCCTGATTCTCTGATACTTCATTCCCTTAACTTGGTATTACCATCTTCAAAAACTGTGGCATTGGTTGGTGCCAGTGGTGGGGGAAAGTCCACTGTCTTTGCTCTCGTAGAGAGGTTTTATGACCCTATTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGTAATCAGATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACCTCTATACTGGAAAACGTGATGATGGGGAAAGATAATGCCACCAAGGAAGAGGCAATTGCTGCTTGCATTGCTGCTGATGCTCACAGCTTCATCTCTAGCCTTCCCCTAAGCTATGACACTCAGGTAGGGGACAGGGGTACAAAACTCTCAGGTGGTCAAAAGCAGAGAATTGCATTGGCTCGAGCAATGATCAAGGATCCTAAAATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCCGAGTCAGAGTCTGCGGTCCAACGGGCTATTGACAAGATTTCTGCTGGCCGAACAACCATTGTGATTGCTCACAGGATAGCAACAGTGAAGAATGCTCATACCATTGTGGTTCTTGAACACGGTTCTGTCACTGAGATCGGTGACCATCGCCAGCTTATGGCAAAAGCAGGAGCATACTACAACCTTGTCAAGCTTGCTACCGAAGCCATTTCAAAACCTCAAGCTATAGAAAATGGCATGCAAAAAGCCAATGATTTATCCATCTATGATAAATCTATTCCTGGTTTATCAGGATCAAGATTTGTAGTTGATATCCCAAGGcctaaaaacttaaaatctaCGCAGGAGGAGAAACAAGAAGACATGGAAGATAAGCAAGTCAAAAAGGCAAGAAAATACAGACTTTCTGAAGTATGGAAATTGCAAAAGCCTGAGCTTATGATGCTATTTTCAGGACTTCTTCTGGGAATGTTTGCTGGTGCTATTCTGTCTCTTTTCCCATTGGTTTTAGGCATATCCTTGGGAGTATATTTTGGCCATGACACTCATAAGATGAAAAGAGATGTTGGGCACCTTTGTTTAGCACTTGTTGGCCTTGGATTTGGTTGCATACTTTCCATGACAGGACAGCAAGGTTTGTGTGGTTGGGCTGGATCAAAGCTGACACAAAGGGTTAGAGACCTCTTGTTTCAGTCCATACTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCCACAGGAGTGTTGGTGTCAAGGCTCTCATTAGACTGTGTTAGTTTTCGTTCAGTACTTGGTGACAGATTCTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTTGGTGTGTCCTTTGCCTTCAGTTGGAGACTAACCCTTGTGGCAGCTGCTGTAACTCCTTTGACACTTGGTGCAAGCTACATAAGCTTGATCATAAACATTGGGCCACAAGTGGATAATGACTCTTATGCCAAAGCTAGTAACATTGCTTCTGGTGCAGTGTCAAACATAAGGACAGTTACTACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCCCTGTCAGAACCTAGGAGAAAATCATTAAGAAGTTCACAAATTCAAGGTCTTATGTTTGGATTCTTTCAAGGTGCCATGTATGGAGCATACACCTTAACTCTTTGGTTTGGTGCATACCTTGTCCAACATGACAAGGCAAAACTTGAAGATGTGTTTAAGATTTTTCTCATTCTTGTTCTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTGGCACCAGATACTTCTATGGCGACTACAGCAATTCCTGCAGTTCAAGATATCATAAATCGTAGGCCACTGATTGACAATGATAGAACAAAAGGTAGGAAAGCAGCAAGATCAAAGCCGTTCAACATAGAATTCAAGATGGTGACATTTGCATACCCATCTAGGTCAGAGGTGACTGTGTTGAGGGACTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCTTGGTGGGACCAAGTGGATCAGGGAAGTCAACGGTCATATGGTTGACTCAGAGGTTCTATGATCCAGATCAAGGAAAGGTGATGATGAGGGGTATAGATTTGAGGGAGATTGATGTCAAGTGGTTGAGGAGGCAAATAGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGACAATATTGCATTTGGGGACCCAAATGCTTCATGGACTGAAATTGAAGAGGTTGCAAAGGAAGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAAGGTTATGAAACCCAGGTTGGTGAAAGCGGGGTCCAGTTATCAGGTGGCCAGAAACAAAGAATTGCTATAGCAAGGGCCATATTGAAGAAATCAAGGGTGCTTTTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAGATGCCCTCAAGAATGTTACTAGAGAGGCAACAACCATAATAGTTGCTCACCGTCTTTCCACAATCAGAGAAGCTGACAAGATCGCAGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCAAGTCAAAATGGTTTGTATGCTAGTCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 4521 0.4349 MADSSSFEGEYHSSHQRHYPTPVSNQSLYGSGSFIPSSSQSNATSRTRRARRTRVPATPFASDDDHSWQGEVSWKFQATGWREYSTNVGSVLSPWPAGSPSDRSRVFRRSANDYYLSRTSRFRGLTSSSYEHSGYGRVELQSYVARDNDHSYFDQHGQPHGLSKLGIIQERSSGKGKSSPLAEEDELSMIDYSITEDPVISPNRNGHGLELPYFKHGHGDYGGNYYVGHGLPSHGSQIYGSGGGYSHHDIDKFSGYDEEGEEDVDEEDARPPKTVGLFSLFRYSTKWDWVLVFVGCLGALINGGSLPWYSYLFGNLVNKISEEADKDKHQMMKDVEKICMFMAGLAAVVVVGAYLQITCWRLVGERSAQRIRTEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFRRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLAGKYAELLQKSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSILIARNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFFIIERIPEIDPYSPEGRKLSVIRGRIELKSVSFAYPSRPDSLILHSLNLVLPSSKTVALVGASGGGKSTVFALVERFYDPIEGIITLDGHDLRTLQVKWLRNQIGMVGQEPILFATSILENVMMGKDNATKEEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLEHGSVTEIGDHRQLMAKAGAYYNLVKLATEAISKPQAIENGMQKANDLSIYDKSIPGLSGSRFVVDIPRPKNLKSTQEEKQEDMEDKQVKKARKYRLSEVWKLQKPELMMLFSGLLLGMFAGAILSLFPLVLGISLGVYFGHDTHKMKRDVGHLCLALVGLGFGCILSMTGQQGLCGWAGSKLTQRVRDLLFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFSWRLTLVAAAVTPLTLGASYISLIINIGPQVDNDSYAKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKSLRSSQIQGLMFGFFQGAMYGAYTLTLWFGAYLVQHDKAKLEDVFKIFLILVLSSFSVGQLAGLAPDTSMATTAIPAVQDIINRRPLIDNDRTKGRKAARSKPFNIEFKMVTFAYPSRSEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMRGIDLREIDVKWLRRQIALVGQEPALFAGSIRDNIAFGDPNASWTEIEEVAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQDALKNVTREATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASSQNGLYASLVRAETEANAFS 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3100 1506 Gene3D ABC transporter type 1, transmembrane domain 1226 1503 IPR036640 GO:0005524|GO:0016021
Ssu4g3100 1506 Pfam ABC transporter 635 784 IPR003439 GO:0005524
Ssu4g3100 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 293 582 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3100 1506 SUPERFAMILY ABC transporter transmembrane region 273 602 IPR036640 GO:0005524|GO:0016021
Ssu4g3100 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1496 IPR003439 GO:0005524
Ssu4g3100 1506 SMART AAA_5 1287 1473 IPR003593 -
Ssu4g3100 1506 SMART AAA_5 644 845 IPR003593 -
Ssu4g3100 1506 Gene3D - 607 855 IPR027417 -
Ssu4g3100 1506 Gene3D - 1249 1500 IPR027417 -
Ssu4g3100 1506 Pfam ABC transporter transmembrane region 292 564 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3100 1506 Pfam ABC transporter transmembrane region 939 1208 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3100 1506 Gene3D ABC transporter type 1, transmembrane domain 279 860 IPR036640 GO:0005524|GO:0016021
Ssu4g3100 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 853 IPR027417 -
Ssu4g3100 1506 ProSitePatterns ABC transporters family signature. 1399 1413 IPR017871 GO:0005524
Ssu4g3100 1506 CDD ABC_6TM_Pgp_ABCB1_D1_like 293 590 - -
Ssu4g3100 1506 CDD ABC_MTABC3_MDL1_MDL2 1260 1498 - -
Ssu4g3100 1506 SUPERFAMILY ABC transporter transmembrane region 926 1243 IPR036640 GO:0005524|GO:0016021
Ssu4g3100 1506 CDD ABC_MTABC3_MDL1_MDL2 617 854 - -
Ssu4g3100 1506 MobiDBLite consensus disorder prediction 1 66 - -
Ssu4g3100 1506 MobiDBLite consensus disorder prediction 17 46 - -
Ssu4g3100 1506 CDD ABC_6TM_Pgp_ABCB1_D2_like 927 1242 - -
Ssu4g3100 1506 Pfam ABC transporter 1279 1426 IPR003439 GO:0005524
Ssu4g3100 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1224 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g3100 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1256 1497 IPR027417 -
Ssu4g3100 1506 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524
Ssu4g3100 1506 Gene3D ABC transporter type 1, transmembrane domain 917 1225 IPR036640 GO:0005524|GO:0016021
Ssu4g3100 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 853 IPR003439 GO:0005524
Ssu4g3100 1506 PANTHER - 97 1505 - -
Ssu4g3100 1506 PANTHER ABC TRANSPORTER B FAMILY 97 1505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3100 Ssu-Chr4 78835558 78843372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3100 968 1503 Calmodulin-binding Proteins AT2G36910 37.546 3.78e-104 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3100 K05658 - gmx:100816700 2593.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3100 4 78835558 78843372 Ssu4g3100 4 78835558 78843372 ECH