Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3098 ATGGACGACGACGACGAGATCCAGTCGCATCCGTCGCCGGCTAGCGGATCCCCGGCGTCGTCGCCGCGGGCGAACGGTCGGATAACGGTGACGGTCGCGGCTCCGGCGCCGCCCGCTCCGAACAGCCTCGCATTAGCCCTTCCCATTCAGCAGCCGGCGAAGGGAAAcggcggcggcggaggagggAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTTCTGATCGACGCGTGGGGAGACAGGTATCTGGAACTGAGCAGAGGAAATCTGAAGCAGAAGCACTGGAAGGAGGTGGCGGAGATCGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACCGACATCCAGTGCAAAAACCGGATCGACACCGTCAAGAAGAAGTATAAATCGGAGAAGGCGAAGATCGCCGCCGGCGCCACCAGCAAGTGGCCGTTCTTCGACCGATTGGACCAGTTAATCGGTCCAACCGCCAAGAGCGGTTCCGGCGGCACCAGCGCCGCCGGAAACAGTAATCTACCCCCTCAGAAAGTGCCGTTAGGGATTCCGGTCGGCGTTCGCGGCGGTGCGAATCAGTATCACCATCCTCAGAAGCCGCCTCAGCAACCTCCGCAGCAGCCGCAACCGGTGCCGTCGAAGAACCAGAAGATTCAGTTCCGGCGCCGCGGTCCTCCGGTGGAGTCCGATTCGTCGGAGAGAGACGCGTCGTCGCCGGGGTCGAGCGACAGTTTTCCGCCGGAGAGTTTCGAGCGGAAGAGGCCGAGAATGATGAGTTCGAGCGCCGCGAAAGGAAGGGAAACAGGACGGAAGGGGAAGGGTTGGGGAAGCGCGGTGAGGGAATTGACGCAGGCGATTCTGAAATTCGGTGAGGCTTATGAACAAGCGGAGAGCTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAGACGCAGTTGGAGATTTCGCAGCTCAAGCTTGGGAGGAAAGGTGCAAACCCTAGCAATCACCACAGCACcaacaccaacaacaataacaacaacaatcataacaataatagtgacagtgagtga 1107 0.561 MDDDDEIQSHPSPASGSPASSPRANGRITVTVAAPAPPAPNSLALALPIQQPAKGNGGGGGGREDCWSEGATAVLIDAWGDRYLELSRGNLKQKHWKEVAEIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFFDRLDQLIGPTAKSGSGGTSAAGNSNLPPQKVPLGIPVGVRGGANQYHHPQKPPQQPPQQPQPVPSKNQKIQFRRRGPPVESDSSERDASSPGSSDSFPPESFERKRPRMMSSSAAKGRETGRKGKGWGSAVRELTQAILKFGEAYEQAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGANPSNHHSTNTNNNNNNNHNNNSDSE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3098 368 MobiDBLite consensus disorder prediction 337 368 - -
Ssu4g3098 368 MobiDBLite consensus disorder prediction 247 274 - -
Ssu4g3098 368 MobiDBLite consensus disorder prediction 10 27 - -
Ssu4g3098 368 MobiDBLite consensus disorder prediction 340 368 - -
Ssu4g3098 368 Gene3D - 67 132 - -
Ssu4g3098 368 Pfam Myb/SANT-like DNA-binding domain 64 154 IPR044822 -
Ssu4g3098 368 MobiDBLite consensus disorder prediction 1 65 - -
Ssu4g3098 368 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 1 337 - -
Ssu4g3098 368 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 1 337 IPR044823 -
Ssu4g3098 368 MobiDBLite consensus disorder prediction 155 277 - -
Ssu4g3098 368 MobiDBLite consensus disorder prediction 159 174 - -
Ssu4g3098 368 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3098 Ssu-Chr4 78810331 78811437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3098 1 350 Trihelix Transcription Factor Family AT3G14180 47.153 2.96e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu4g3098 Myb_DNA-bind_4 5.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3098 - - gmx:100812599 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3098 4 78810331 78811437 Ssu4g3098 4 78810331 78811437 ECH