Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3095 ATGGCTAATGAAGGAGACAAAAGCAATGACTTCTACACGATCCTTGGTTTGAACAAGGAGTGCACTGAATCAGAGCTAAAGAACGCTTATAGGAAACTTGCAAAGAAATGGCACCCGGATCGTTGTTCAGCGTCCGGGAATTCGGAGTTGGTGGAAGAAGCTAAGAAGAAATTCCAGGAAATCGGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGGACGAAATGTTTACAATGATGAGTCAGACTAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGCTGTTTGAAGACATGTTTCAAGCAGATATTGGATTGGATGGAAGCCCTTCTCTTGCTTCTGTTGATTGCTCTACTTCATCTGCTTACATGACGTATAGTGAAAGTTCTAGTTCAAATAAACGCAATTCCTCTGAGATGAGTTTTGGGAAGGCAGAGGATTCTTCTGTCTTTGATGCCAGTTACCAGAATTTCTGTTTGGGGACAGGTGAACCAACTCCAAGATATAAAGAAGGGAAAGGGGGGAATTCCAGGAGGAGGAGGTAG 624 0.4359 MANEGDKSNDFYTILGLNKECTESELKNAYRKLAKKWHPDRCSASGNSELVEEAKKKFQEIGEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMFTMMSQTKSNENGEESFEELQQLFEDMFQADIGLDGSPSLASVDCSTSSAYMTYSESSSSNKRNSSEMSFGKAEDSSVFDASYQNFCLGTGEPTPRYKEGKGGNSRRRR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3095 207 MobiDBLite consensus disorder prediction 184 207 - -
Ssu4g3095 207 PANTHER PUTATIVE, EXPRESSED-RELATED 1 206 - -
Ssu4g3095 207 CDD DnaJ 10 70 IPR001623 -
Ssu4g3095 207 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Ssu4g3095 207 SMART dnaj_3 9 73 IPR001623 -
Ssu4g3095 207 PRINTS DnaJ domain signature 12 30 IPR001623 -
Ssu4g3095 207 PRINTS DnaJ domain signature 30 45 IPR001623 -
Ssu4g3095 207 PRINTS DnaJ domain signature 53 73 IPR001623 -
Ssu4g3095 207 PRINTS DnaJ domain signature 73 92 IPR001623 -
Ssu4g3095 207 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Ssu4g3095 207 Gene3D DnaJ domain 7 134 IPR036869 -
Ssu4g3095 207 MobiDBLite consensus disorder prediction 152 172 - -
Ssu4g3095 207 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Ssu4g3095 207 Pfam DnaJ domain 10 78 IPR001623 -
Ssu4g3095 207 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3095 Ssu-Chr4 78766067 78768964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3095 11 78 C2H2 Transcription Factor Family AT1G74250 44.928 4.26e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3095 - - gmx:100779251 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3095 4 78766067 78768964 Ssu4g3095 4 78766067 78768964 ECH