Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3092 ATGGCCAAAGTGGGAAAACTAACAAAGCTCAAGTCAGCGATCAAGAGATGGCCCTCATTGACCAGGCTCAGCCGCAACAGCAGCAGTGTCTCTTCCAACAAAGGGGGTGCTGGAACATCCTCTTCCAAGGAACATGAACAGGAACTTCATGCTGTCTATGTTGGCAAGTCTCGGAGGCGCTACCTCGTGAACTCCGAAGTGATCGATCACCCTGTGTTTCAGGAGCTAGTGGACAGGTCTAGTACTGGCTGTGATGATGGGGTGGTGGTTTCCTGTGAGGTGGTGCTGTTTGAGCATTTGCTGTGGATGCTTGAGAGCGAAGAGACCCAGTTGGGGTCCATGGACGAGCTGGTCGAGTTCTACTCTTGTGCCTGCTGA 378 0.5265 MAKVGKLTKLKSAIKRWPSLTRLSRNSSSVSSNKGGAGTSSSKEHEQELHAVYVGKSRRRYLVNSEVIDHPVFQELVDRSSTGCDDGVVVSCEVVLFEHLLWMLESEETQLGSMDELVEFYSCAC 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3092 125 MobiDBLite consensus disorder prediction 23 47 - -
Ssu4g3092 125 Pfam Auxin responsive protein 15 104 IPR003676 GO:0009733
Ssu4g3092 125 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR78 4 123 - -
Ssu4g3092 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 4 123 IPR003676 GO:0009733
Ssu4g3092 125 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3092 Ssu-Chr4 78735256 78735633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3092 3 104 Calmodulin-binding Proteins AT4G34750 25.000 7.90e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3092 - - gmx:100797158 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3092 4 78735256 78735633 Ssu4g3092 4 78735256 78735633 ECH