Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3088 ATGGCTACCACCGCCAACGCCGCCGCAGCCCCGCCGCGCCAGCTCTCCCAGAAGGAAGCCGACATCCAGATGATGCTGGCGGCCGACGTGCACCTCGGCACGAAGAACTGCGACTTCCAAATGGAACGCTACATCTTCAAGCGCCGCAACGACGggatttacattattaaccTTGGGAAGACGTGGGAGAAGCTTCAGCTTGCTGCTAGGGTTATTGTCGCAATTGAGAACCCTCAGGATATCATTGTTCAATCCGCGAGGCCTTATGGGCAGAGAGCGGTTCTCAAGTTTGCTCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCACACTCCCGGTACCTTCACCAATCAGCTTCAAACTTCCTTCAGTGAGCCTCGCCTCCTCATCCTCACCGATCCAAGAACGGATCACCAGCCTATTAAGGAAGCTGCTCTTGGGAATATCCCAACCATTGCTTTCTGTGACACTGATTCACCTATGCGGTATGTGGACATTGGAATTCCTGCCAACAACAAAGGCAAACATAGCATAGGTTGTCTCTTTTGGCTTCTTGCAAGGATGGTGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCAtgGTTGATTTGTTCTTCTATAGAGAACCTGAGGAGGCCAAGCAACAAGAGGAGGAGGAAGCTCCAGCGGGAGATTATGCCATCACGGACTTCAATGCAGGTGCTATTGCTGCTGATGGCCAGTGGCCTGGTACAATTGATCAATCGTGGAGTGATGCAGTTCCACAACCTATTCCAGCAGTACCTGGTGGCAACTGGGGGGCACCTGCTGAAGCACCAGCTGTTGCAGTTGCAGTTGCAGGAGATTGGGGTGAGACtgttccaccaccaccaccaccgcaaATCCCTACTCCTTCTGGAATTGAATCTGTTCAAGCAACTGGCTGGGATTAA 945 0.5026 MATTANAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDFNAGAIAADGQWPGTIDQSWSDAVPQPIPAVPGGNWGAPAEAPAVAVAVAGDWGETVPPPPPPQIPTPSGIESVQATGWD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3088 314 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 PANTHER 40S RIBOSOMAL PROTEIN SA 13 285 - -
Ssu4g3088 314 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Ssu4g3088 314 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 Hamap 40S ribosomal protein SA [rps-0]. 9 257 IPR027498 GO:0003735|GO:0006412|GO:0015935
Ssu4g3088 314 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 Gene3D - 21 227 - -
Ssu4g3088 314 PANTHER 40S RIBOSOMAL PROTEIN SA 13 285 IPR005707 GO:0003735|GO:0006412|GO:0015935
Ssu4g3088 314 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu4g3088 314 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Ssu4g3088 314 MobiDBLite consensus disorder prediction 286 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3088 Ssu-Chr4 78708694 78710607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3088 5 287 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.175 8.55e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3088 K02998 - gmx:100805318 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3088 4 78708694 78710607 Ssu4g3088 4 78708694 78710607 ECH