Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3079 ATGAACCAGATGTTCAATTTCGGCGACAATCTGGAGGACTACTTCAGCCCTATTGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGTTAACCCTGGCCCGTTCTCTGGAAACGGAGTTCCAGTCTCACCTGTTGCTGCATCTGCTGATGTTACTGCATATTTCAGTTCTGAGCATTCAAgcaattcatttgaatattctgATCTTGGATGGGGTGAACAAGCCCCCAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGAGGTTGAATCTCAGTTTGTGCAGGGTGCTGAGCAGAAGAAAAACTCTCAGGATATGATTTCTGTGCAAGATGATTCTGCAAAGACACTATCTGAGGAGCTTGCTGACATTGAATCCCAGCTGAAGTTCTTTGATACCCCTTTTCTTAATGGAGCCTGGGGCGATGCTTCGTTGGCTTCTTTGCTCGGCGTGGATGCAACTCAGGATGCTGGAAACCCAATGGACCTTTGGAGCTTTGATGACCTGCCTTCCTTGGCAGGAGGAGTTTTCTGA 543 0.4586 MNQMFNFGDNLEDYFSPIDQVEQKPLVNQYVNPGPFSGNGVPVSPVAASADVTAYFSSEHSSNSFEYSDLGWGEQAPKTPEISSMLSAPLEVESQFVQGAEQKKNSQDMISVQDDSAKTLSEELADIESQLKFFDTPFLNGAWGDASLASLLGVDATQDAGNPMDLWSFDDLPSLAGGVF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3079 180 PANTHER - 44 179 - -
Ssu4g3079 180 PANTHER DNA-BINDING DOMAIN 44 179 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3079 Ssu-Chr4 78469608 78470150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3079 46 180 AP2-EREBP Transcription Factor Family AT1G53910 40.000 5.63e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3079 K09286 - gmx:100818646 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3079 4 78469608 78470150 Ssu4g3079 4 78469608 78470150 ECH