Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3076 ATGGCCTCTTCTGGGGCAAAAACTGAAACAACTTCAAGCACAAGGAGGCGAAAGATTGAGATGAAGGAAGTGGAACCGACAAACAGGCGTTACGTGACGTTCTCCAAACGCAAACTAGGGCTCTTCAACAAACTCACCGAGCTCTCCCTTCTGTGCAACGTAGAATCCGCCTTGATCATTATCTCCCAAAACGGCAAGCTCTATTCCTGCGGCTACCCCGACGCCGAGGCCGTCGTTCGCCGCTATCTCACCGGTGGGCCTCCCCAACGGCGCAACCGTGCGAGCAAGAAGGAGCAACAAGAGTTTGTTGAAAAGCAAAGGCTAGAGTACGAGGCCGTTCAGAATCacttgaaaaaagagaaagggcgTCTACAAGCGATCGTCGAGGAGAGACAAAAGAGTAGTTTGTGCTTTCCCCCTTGGTGGAATCTCTCCACCGAGGACATGGGTTTGGAGGATCTTGAGCAGTTCAAGACCTCCTTGGAACGTTTGAAGTTTAACCTAGTTGGGGCGCTGCAAGAGAAGCAGTTGAATTCAGTTCCCTCAATGCTACCTGCTAGTGCTATCGTTTCACCGCTACAGTTTTCAAACATGTCGCTCTTGACTCAACGTCTCAGTGGAAATCAAGTTCAAGATAATCGGAGTGGTgctagtactggtttgacatttcCTGCAAGTGGTTTTggtcattattaa 696 0.4626 MASSGAKTETTSSTRRRKIEMKEVEPTNRRYVTFSKRKLGLFNKLTELSLLCNVESALIIISQNGKLYSCGYPDAEAVVRRYLTGGPPQRRNRASKKEQQEFVEKQRLEYEAVQNHLKKEKGRLQAIVEERQKSSLCFPPWWNLSTEDMGLEDLEQFKTSLERLKFNLVGALQEKQLNSVPSMLPASAIVSPLQFSNMSLLTQRLSGNQVQDNRSGASTGLTFPASGFGHY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3076 231 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Ssu4g3076 231 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 8 186 - -
Ssu4g3076 231 Coils Coil 103 130 - -
Ssu4g3076 231 SUPERFAMILY SRF-like 15 89 IPR036879 GO:0003677|GO:0046983
Ssu4g3076 231 PANTHER MADS BOX PROTEIN 8 186 - -
Ssu4g3076 231 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Ssu4g3076 231 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g3076 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 69 IPR002100 GO:0003677|GO:0046983
Ssu4g3076 231 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Ssu4g3076 231 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Ssu4g3076 231 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Ssu4g3076 231 Gene3D - 27 110 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3076 Ssu-Chr4 78318336 78319031 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3076 13 165 Type I MADS-box Gene Family AT5G60440 33.121 8.59e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu4g3076 SRF-TF 7.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3076 - - gsj:114418701 295.434