Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3074 ATGTTCGAACCAGGGCAAATTGAAGGAGAAAAAATCGGAAGATTAAGCGAGTGGGTAATAAAAAAGCAAATACTGCAAAAACGCCAAGCACAAGGAGGGAGGGTTGAGGTCAAGAAAGTTGAGCAGATAAACCGGCGTCACGTGACCTTCTCCAAACGCAAACTAGGGCTCTTCAACAAACTCACCGAGCTCTCCCTTCTGTGCAACGTAGAAACCGCCTTGATCGTTACCTCCCAGAACGGCAAGCTCTATTCCTGCGGCTACCCCGACGCCGACGCCGTCGTTCGCCGCTACCTCGCCGGAGGGCCTCCCCAACGGACGGACCGCGCAAGCAGAAAGAAGCGGCAAGAGACAATCGAAACCCTAAGGCTGGAGTACGAGGCCGTTCAAAATCAGttgaaggaagagaaaaagcGCCTGCAAGCGATGAGAGAGGCACAAAAGAGCGGCTCCTGCTTTCCCTCGTGGTGGAATCAATCCACTGAGGGCATGAGTTTGGAGAGTCTTGAGCAGTTCAAGGCCTCCTTGGAACGTTTGAAGTTTAACCTAGTTGGGGCCGTGCAAGGGAAGCAGTTAAATTCAGTTCCATCAATGCCACCTGCTGATGCAATAGTTCCATCGTATGCTATAGTTTCAGCAATGACATCTGCTATGGTTCCCCCGCCACAGTTGTTAAACATGTCGCCCTTGACTCAGCGTTTCAGTGGAACTCAAGTTCAAGATTATCGGAGGAGTGGTGCTAGTACTGGTTCGACGACGTTTCCTGCTAGTGGTTTCGGCCGGAAATAA 789 0.5019 MFEPGQIEGEKIGRLSEWVIKKQILQKRQAQGGRVEVKKVEQINRRHVTFSKRKLGLFNKLTELSLLCNVETALIVTSQNGKLYSCGYPDADAVVRRYLAGGPPQRTDRASRKKRQETIETLRLEYEAVQNQLKEEKKRLQAMREAQKSGSCFPSWWNQSTEGMSLESLEQFKASLERLKFNLVGAVQGKQLNSVPSMPPADAIVPSYAIVSAMTSAMVPPPQLLNMSPLTQRFSGTQVQDYRRSGASTGSTTFPASGFGRK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3074 262 Coils Coil 112 146 - -
Ssu4g3074 262 PANTHER MADS BOX PROTEIN 29 201 - -
Ssu4g3074 262 SUPERFAMILY SRF-like 33 107 IPR036879 GO:0003677|GO:0046983
Ssu4g3074 262 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Ssu4g3074 262 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Ssu4g3074 262 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Ssu4g3074 262 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 29 201 - -
Ssu4g3074 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 85 IPR002100 GO:0003677|GO:0046983
Ssu4g3074 262 ProSiteProfiles MADS-box domain profile. 30 90 IPR002100 GO:0003677|GO:0046983
Ssu4g3074 262 Gene3D - 43 128 IPR036879 GO:0003677|GO:0046983
Ssu4g3074 262 MobiDBLite consensus disorder prediction 243 262 - -
Ssu4g3074 262 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3074 Ssu-Chr4 78295896 78297354 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3074 34 241 Type I MADS-box Gene Family AT5G60440 29.245 7.30e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu4g3074 SRF-TF 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3074 - - gmx:100817750 288.885