Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3073 ATGTTTGCGTTTCATCCTCAAGGAGCTCCGAAGCACTCTTGCACTCTTCTCGCTGTGACCTGTGGCGCAAGTTTCGCCGAGCACAAGTCTTCGCGGAACCAGCGCAAATATCCTTTCCCGGAGTTAGTTTCCGCGGGGCGTCTTGAGGTTCAAACTCTGCACAATCCGGAAAAGGATCAGTTTCGGAAAGTTCTGGAGTCGTATCAACCGAATTTTGTTTACTTGCAAGGGGAACACCTAGAAAATGGCGAGGTTGGTTCACTGGTTTGGCAAGGTGTGGAATTGTCCACCTCTGAAGCTGTAACGGAGCTCTTTGGTTCCACATTCCCGACGGCTGTTTATTTAGAAATACCAAATGGAGAAAGTTTTGCAGAGGCTCTTCATGTTAAgGGAATCCCATATGTTATATTTTGGAAGAATGCCTTTTCTTGTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTAGTACAGAGTTCATCTACACATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCAAAACAATCAAGCGCTTCCTACTGACAGCAATGATGCTAATAGTGAGATGGGGCCACACCTTCTTGGTGACTGTCTCAAAATCAATGTTGACCCTCCAGAGATGGATGAAGAGGATGATGACGAAAGTTCCTCCGGCAGTCTGCCTGCCATAAAGATATATGAGGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCAACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGACGGACTCAGAGCTCTCTTAACTATTGAAatACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCACTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCTGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGagtcatataaaaaatgagataattgAGAAGAGTCAACTAGTTCGTGCACAACTCAACAATGAGGGAAACAAACAGAACATCTCTGAACCTCGCAGATCTGCTTCTATTGCCTGTGGAGCATctgtatttgaaatttgcatGAAGCTTCCTCAATGGGCCTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAAGCTGTGAGAAAGATAGttgtacaaacaaaaataatataatttttagcaGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTACAAGAAAAAGGTGTGAACCAAGCCAAGGGGCTAGCCCTGGTCTTCATGAAGGTGTCTTTGCAGGGCAGGGCACTGTTCGTAAAGTAAATGAAGAGGAAAAGGATAGAAAAATGGTGAATGGGATTAGCACACCATTAACTCCTGCTAGGCAGAGATTAAAAGTatctgcaatgaggccaattcCTCACATTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACAGTTGGTTTTGATGGCACCCAAGTAGAGACTAATTTGCCACTTGTTGCCCCTACAAAGCGTAGTAGTATTGGATCATCTGCAACACACAGAAAATCATTTTCAAGCGCAGCTCAGTCTAAGCAGGTTATTTCATTGAACCCATTGCCTCTTAAGAAACATGGTTGCGGTAGAGGCCCAGTACAGACATGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGCGGGCATAATCGACTGATTCCTCAAGGAGGGCTTACCGAGTTCCCTGATGCCATACTCAATGGAAAACGTCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACTAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACAACAACCAATAGAATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATATGTCCTCATTGtagtattacaaatttcaagaagaaacaaaatgttgCTAATGGGTATTCTCAAGGGTCAATGTCTTCACGACACCTTTGA 2346 0.4237 MFAFHPQGAPKHSCTLLAVTCGASFAEHKSSRNQRKYPFPELVSAGRLEVQTLHNPEKDQFRKVLESYQPNFVYLQGEHLENGEVGSLVWQGVELSTSEAVTELFGSTFPTAVYLEIPNGESFAEALHVKGIPYVIFWKNAFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQALPTDSNDANSEMGPHLLGDCLKINVDPPEMDEEDDDESSSGSLPAIKIYEDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVRAQLNNEGNKQNISEPRRSASIACGASVFEICMKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQSCEKDSCTNKNNIIFSSPPGWLKPPPPTRKRCEPSQGASPGLHEGVFAGQGTVRKVNEEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETVGFDGTQVETNLPLVAPTKRSSIGSSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKQNVANGYSQGSMSSRHL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3073 781 Gene3D - 593 698 IPR036431 GO:0003677
Ssu4g3073 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 771 IPR042293 -
Ssu4g3073 781 SMART ARID_2 592 695 - -
Ssu4g3073 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 771 - -
Ssu4g3073 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Ssu4g3073 781 CDD ARID 597 695 - -
Ssu4g3073 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Ssu4g3073 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 761 IPR013083 -
Ssu4g3073 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Ssu4g3073 781 SUPERFAMILY FYVE/PHD zinc finger 698 765 IPR011011 -
Ssu4g3073 781 SMART bright_3 596 700 IPR001606 GO:0003677
Ssu4g3073 781 MobiDBLite consensus disorder prediction 446 473 - -
Ssu4g3073 781 CDD PHD_ARID4_like 705 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3073 Ssu-Chr4 78274589 78282330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3073 4 770 ARID Transcription Factor Family AT3G43240 60.724 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu4g3073 ARID 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3073 - - gmx:100816540 1469.14