Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3071 ATGGAGAATCGAAAGACATCGGCATACTACGAGAACAGAGCGGTGCAGTTTGGGGTAGTGAGCTCCGAGTGGCTCGCTCAGGCCCAGTCCGCCACTGTCCATCAGGCCCATCCTCCTCCtcaccaccatgaccatgaCAACAAGAACGACGACAAGCCCTTCTCGGTCATCGACGAGTTCGACACGTGGCGCAAACACCCCGACTTGGCGGAGGCCGTGGCCGCCATTCGCGCCCTGGCCGCCGTCATCCGCTCCAGCAAGGCCACCACCATGATGCAGCTCGAAATCCAACTCAAAAACGCCTCCGATTCCCTCAAATGTTGGGACACAACCTCCATCTCTCTCACAGCGGCCTGCGATCTCTTCATGCGATACGTCACCAGGACCTCCGCTCTGGAATACGAGGACTTCAATTCCGCAAAGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGGTCAGTCGCTCCACTCGCACGTGCCAAACATCATTTCAGTTCCTCACTCACACCATCGATTCGTTTTCCGCTTCGCAGGCTCGCAACATCATTGCGATGCTGACTCAGGATTTTATATTCGACGGTTGCACAATTCTGGTTCACGGTTTCTCCAGAGTCGTACTTCAGGCTCTCAAACTCGCCGCACAGAACAGCAAGCTCTTTCGCGTCTTCTGCACAGAGGGGAGGCCGGATAGGACGGGTTTGAGGTTGTCGAATGAGCTGGCGAAGCTTGATGTTCCTGTGAAGCTTGTTATAGACTCTGCAGTGGCTTATACTATAGATGAGGTTGACATGGTGTTTGTCGGGGCAGATGGGGTTGTTGAAAGTGGTGGTATAATCAACATGATGGGGACATACCAAATTGCCTTGGTTGCTAAGAGTATGAACAAGCCAGTTTATGTGGCTGCTGAAAGCTACAAGTTTGCTCGACTTTACCCTCTGGACCAAAAGGATTTGGCACCTGCCTTGCGCCCAGTAGATTTCGGGGTACCTGTTCCATCCAAGGTTGAGGTTGAATGTTCTGCCCGGGATTATACTCCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCAGTTGTTAGTGATGAACTCATCCAGCTATACTTGTAG 1140 0.5123 MENRKTSAYYENRAVQFGVVSSEWLAQAQSATVHQAHPPPHHHDHDNKNDDKPFSVIDEFDTWRKHPDLAEAVAAIRALAAVIRSSKATTMMQLEIQLKNASDSLKCWDTTSISLTAACDLFMRYVTRTSALEYEDFNSAKSRLLERAEKFGEISFKVSRSTRTCQTSFQFLTHTIDSFSASQARNIIAMLTQDFIFDGCTILVHGFSRVVLQALKLAAQNSKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLVIDSAVAYTIDEVDMVFVGADGVVESGGIINMMGTYQIALVAKSMNKPVYVAAESYKFARLYPLDQKDLAPALRPVDFGVPVPSKVEVECSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3071 379 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 7 176 - -
Ssu4g3071 379 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 7 176 - -
Ssu4g3071 379 Pfam Initiation factor 2 subunit family 67 367 IPR000649 GO:0044237
Ssu4g3071 379 SUPERFAMILY NagB/RpiA/CoA transferase-like 67 378 IPR037171 -
Ssu4g3071 379 MobiDBLite consensus disorder prediction 30 51 - -
Ssu4g3071 379 MobiDBLite consensus disorder prediction 37 51 - -
Ssu4g3071 379 Gene3D - 182 379 IPR042529 -
Ssu4g3071 379 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 182 379 - -
Ssu4g3071 379 Gene3D - 52 154 IPR042528 -
Ssu4g3071 379 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 182 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3071 Ssu-Chr4 78257770 78259819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3071 7 379 Eukaryotic Initiation Factors Gene Family AT1G53880 74.799 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3071 K03239 - gmx:102669842 601.668