Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3063 atgacCATCGGCATTgcttccaccaccacaagcttcatcaccactaccatcgtcacctcCACAACCACGACCACCAatgctgctgccaccaccacaagcaCCGTCACCCCCACCACCGACTCCgtcgccaccatcaccactagcATCGCCACAATCACCACCACTCCACATTCTACCCGGAGCTCTGCTTCTCCGCCGTGGCCTCGGAGCCCAACTGCGACGCACAAGGTCACCACCCGCCGCGACGTCATCGAACTGTCCCTCAACGTCACCGCCCGCGCCGTGGAGCACAACTACTTCACGGTGAGAAGGCTCCTGATCTCCAAACGCGGCCTAACGAAGCGCGAGAAAACCGCGCTCCACGACTGCCTCGAGACCGTCGACGAGACCCTCGACGAGCTCGAGCAGGCCCGACGGGACCTCCAGCTGTACCCGAACAGAAAGACCCTCTACCAGCACGCCGACGACCTCAAAACCCTCATCAGCGCCGCGATAACGAACCAGGTCACTTGCCTGGACGGGTTCTCCCACCAGGACGCGGACAAGCGCGTGAGGGAGGCTTTGGAAGAGGGACAGGTCCACGTGGAGCACATGTGCAGCAACGCATTGGCCATGATCAAGAACATGACCGACGCCGACATTGCGACCCACGAGTACGAGATGAGGCTGGGGAATGGTAACAGGAAGTTAGTGGAGAACAATGCGGGGGGGATTGAGTGGCCCGAGTGGATTTCGGCGGCGGACAGGAGGCTGCTTCAGGCGCCCACGGTGAAGGCCGacgtggtggtggcggcggacGGGAGCGGGGACTTTAAGACCGTGTCGGCGGCGGTGGACGCGGCGCCTCTGAAGAGTAGTAAGAGGTTTGTTATAAGGATAAAGGCTGGGGTGTACAGAGAGAACGTGGATGTGCCTAAGAAGAAGACTAATATCATGTTCTTGGGGGATGGGAGGACCAACACTATCATCACCGCTAGCAGAAACGTTGTTGATGGCAGCACCACTTTCCACTCTGCCACCGTCGCTGTTGTGGGTGGAAACTTTTTGGCCCGGGACATAACATTCCAAAACACCGCGGGTCCCTCAAAGCACCAGGCTGTGGCCCTACGAGTTGGTGGGGACCTCTCAGCCTTCTTCAATTGTGACATCCTAGCATACCAAGACACCCTCTACGTCCACAACAACCGTCAATTCTTTGTGAACTGCCTCATTGCGGGGACAGTGGATTTTATCTTTGGTAACTCAGCTGTGGTGTTCCAAGATTGTGACATCCACGCTAGGCGTCCTAACTCGGGCCAAAAGAACATGGTCACAGCACAAGGCAGGGTTGACCCTAACCAAAACACTGGCATTGTGATCCAGAAGTGTAGAATTGGTGCCACCAAGGATTTGGAGCCTGTGAAGAAGAGTTTCGCTACATATCTTGGGAGGCCATGGAAAGAGTACTCTAGGACTGTGATCATGCAGAGTACTATAAGTGATGTGATTGACCCAGTTGGGTGGCATGAATGGAATGGAAACTTTGCATTGAGTACCTTGGTTTATAGGGAATATCAGAACACTGGGCCTGGTGCTGGAACTTCAAAGAGGGTTACTTGGAAAGGGTTTAATGTCATTACTGATCCTGCTGAGGCCCGGGCTTATACCCCTGGAAGCTTCATTGCCGGCTCTAGCTGGTTGGGCTCTACCGGGTTTCCTTTCTCTCTTGGGTTGTAA 1716 0.5157 MTIGIASTTTSFITTTIVTSTTTTTNAAATTTSTVTPTTDSVATITTSIATITTTPHSTRSSASPPWPRSPTATHKVTTRRDVIELSLNVTARAVEHNYFTVRRLLISKRGLTKREKTALHDCLETVDETLDELEQARRDLQLYPNRKTLYQHADDLKTLISAAITNQVTCLDGFSHQDADKRVREALEEGQVHVEHMCSNALAMIKNMTDADIATHEYEMRLGNGNRKLVENNAGGIEWPEWISAADRRLLQAPTVKADVVVAADGSGDFKTVSAAVDAAPLKSSKRFVIRIKAGVYRENVDVPKKKTNIMFLGDGRTNTIITASRNVVDGSTTFHSATVAVVGGNFLARDITFQNTAGPSKHQAVALRVGGDLSAFFNCDILAYQDTLYVHNNRQFFVNCLIAGTVDFIFGNSAVVFQDCDIHARRPNSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEPVKKSFATYLGRPWKEYSRTVIMQSTISDVIDPVGWHEWNGNFALSTLVYREYQNTGPGAGTSKRVTWKGFNVITDPAEARAYTPGSFIAGSSWLGSTGFPFSLGL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3063 571 Coils Coil 120 144 - -
Ssu4g3063 571 SMART PMEI_2 37 205 IPR006501 GO:0004857
Ssu4g3063 571 PANTHER PECTINESTERASE 13 570 - -
Ssu4g3063 571 SUPERFAMILY Pectin lyase-like 255 570 IPR011050 -
Ssu4g3063 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 210 IPR035513 -
Ssu4g3063 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 210 IPR035513 -
Ssu4g3063 571 MobiDBLite consensus disorder prediction 55 76 - -
Ssu4g3063 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 79 209 IPR006501 GO:0004857
Ssu4g3063 571 CDD PMEI-like_3 70 210 - -
Ssu4g3063 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Ssu4g3063 571 Gene3D - 254 571 IPR012334 -
Ssu4g3063 571 Pfam Pectinesterase 260 556 IPR000070 GO:0030599|GO:0042545
Ssu4g3063 571 MobiDBLite consensus disorder prediction 55 74 - -
Ssu4g3063 571 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Ssu4g3063 571 Pfam Plant invertase/pectin methylesterase inhibitor 70 205 IPR006501 GO:0004857
Ssu4g3063 571 PANTHER PECTINESTERASE 13 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3063 Ssu-Chr4 78158377 78165116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3063 76 571 Carbohydrate Esterase AT3G14310 74.118 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3063 K01051 - gmx:100777646 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3063 4 78158377 78165116 Ssu4g3063 4 78158377 78165116 ECH