Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3059 ATGGGTGCCACGTCAGGGCCAAGTGATACACTGAGTCAATCTGACACCGTTGAGATAACCGGGAAGATCATGGTGGTGGCCATAATATTCCTCTTCATGGTGGTTGTGTTCGTTCTTGTGCTCCATCTCTATGCCAAGTGGTTCTGGTGGAGCATGGAGGAAAACGCGGCTCCTCAGCCCCGCCACCGCCGGAGGCGGCGCCGCCGGCGGTTTGTCTTCGCCCCCGGCCAAGACCCGGTGATCTATGAAATACACCAAGTTGGGCTTGACCCTTCGGTTCTTAGGTCCTTGCCAGTGTTGGTGTTCCAACCTGAGGACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTCAAGGGGAAAAGGCTAGGCTTTTGCCCAAATGCAATCATGGGTTTCACGTGGATTGCATTGACATGTGGTTCCATTCACACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGCTTTTGAACCCTCTAAAGAGTCTACACCCTCAAACAATGAAGAGAGTGTCTTGGGGAACAGTGAGGAATTATCACATGAAGAGAATTCAGCTGCTGTGAGTGGTTTGGAGTCTTCAAGTTTTCCCACAAATGTGTTGGTTTGGGGGAACCAGACACAAGTGAGTTCTTTTGGTGTTTCCTTGGAAGGAGAGCAAGAAGAAGGAACTTCTCAGCAGCCACCTTGTTCTCCATTACCTACACCAGCTTCGTCAGCTAGTGGTGATGTTAATGGTAGGTGTCATGGAATGTTGGTGATTGACATTCCAAGTGAGTGCACTTCCTCCTCTTTGTCCCCTTCTGGGAGTAGGTGTGCTGAAGATGAGGTGAAATCACCAATGGCTGCCACATTAAGGTCATTTAAGAGGCTTTTGAGCAGGGACAAAAAGTGTAGTCCTTGTAGTCCCAGTTCTATAGATGTGGAACAAGCACAGAGCTAG 951 0.4921 MGATSGPSDTLSQSDTVEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWSMEENAAPQPRHRRRRRRRRFVFAPGQDPVIYEIHQVGLDPSVLRSLPVLVFQPEDFKEGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVAFEPSKESTPSNNEESVLGNSEELSHEENSAAVSGLESSSFPTNVLVWGNQTQVSSFGVSLEGEQEEGTSQQPPCSPLPTPASSASGDVNGRCHGMLVIDIPSECTSSSLSPSGSRCAEDEVKSPMAATLRSFKRLLSRDKKCSPCSPSSIDVEQAQS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3059 316 SUPERFAMILY RING/U-box 93 161 - -
Ssu4g3059 316 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Ssu4g3059 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 162 IPR013083 -
Ssu4g3059 316 MobiDBLite consensus disorder prediction 162 193 - -
Ssu4g3059 316 MobiDBLite consensus disorder prediction 216 231 - -
Ssu4g3059 316 PANTHER RING-H2 FINGER PROTEIN ATL3 8 313 - -
Ssu4g3059 316 CDD RING-H2_EL5_like 112 155 - -
Ssu4g3059 316 MobiDBLite consensus disorder prediction 161 193 - -
Ssu4g3059 316 Pfam Ring finger domain 112 155 IPR001841 -
Ssu4g3059 316 MobiDBLite consensus disorder prediction 216 244 - -
Ssu4g3059 316 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 313 IPR044675 -
Ssu4g3059 316 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3059 Ssu-Chr4 78072615 78073565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3059 11 299 C3H Transcription Factor Family AT1G53820 42.810 1.66e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3059 - - gmx:100775523 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3059 4 78072615 78073565 Ssu4g3059 4 78072615 78073565 ECH