Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3058 ATGACCACCATTCTCACCTTCTTCACAGCCATAGCTTTTGTGGCTCAGTCATTTCAAAACTACATTATCCAGAGGCTGCACAAACTGTACAAGCATTATGGATATGCTGCTGCAGTGAAGGAAAATGAGGAGCATGAAAGTGATTATTGTTCAGTGTGTCTAAGCCAAATTTGTAAGGGCGATAAGGTTCGGTCTCTTCCAGTGTGCAACCACAGGTATCATGCTGATTGTATTGGCGCTTGGTTGAAGAACCACACCACATGCCCTCTTTGTAGGAACAAAATCACTGACCATATCCCCCAGAAACATAAACAGTATCAGATGTACACTTGTGTGTAA 339 0.4277 MTTILTFFTAIAFVAQSFQNYIIQRLHKLYKHYGYAAAVKENEEHESDYCSVCLSQICKGDKVRSLPVCNHRYHADCIGAWLKNHTTCPLCRNKITDHIPQKHKQYQMYTCV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3058 112 Pfam Ring finger domain 49 92 IPR001841 -
Ssu4g3058 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 98 IPR013083 -
Ssu4g3058 112 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 99 IPR044675 -
Ssu4g3058 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED 32 99 - -
Ssu4g3058 112 SUPERFAMILY RING/U-box 38 99 - -
Ssu4g3058 112 SMART ring_2 50 91 IPR001841 -
Ssu4g3058 112 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3058 Ssu-Chr4 78048492 78048982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3058 50 95 C3H Transcription Factor Family AT1G53820 58.696 3.07e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3058 - - gmx:100500375 200.675