Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3055 ATGGCTCCTGAACATGAAGACGACCTCAAGGACGAGAAGAACCCTCGCCCCCTTGACGAGGATGACATCGCCCTCCTCAAAACCTATGGTTTGGGACCTTACTCCACAAGCATAAAAAAGGTGGAGAAGGAAATCAAAGATATGGCAAAGAAAGTGAATGACTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAgGTGGCAAGGTGCACAAAGATTATAAATCCAAACTCTGAAGATGCGAAGTATGTTATCAATGTGAAGCAGATTGCAAAGTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACAGTTGAAGAGAAACCAGATGTGACATATAATGATGTTGGCGGTTGCAAGGAGCAGATTGAAAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGCATTGATCCTCCAAAGGGTGTTCTTTGTTATGGTCCCCCAGGAACTGGGAAAACACTTTTAGCCAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGAGCTAGGATGGTTCGTGAACTATTTCAGATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGACGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGGCCTGACACTCTAGATCCAGCACTTCTACGGCCTGGGCGATTGGACCGTAAAGTTGAATTTGGCCTTCCTGACTTAGAGAGTAGGACGCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGATTTGAACTTTTGGCTCGGCTGTGCCCAAATTCCACtgGAGCTGATATAAGGAGTGTATGCACAGAAGCTGGTATGTATGCTATCCGTGCCCGGAGGAAGACTGTAACTGAGAAAGACTTCCTTGATGCAGTAAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCAACTCCCAAGTATATGGTCTACAACTGA 1281 0.4434 MAPEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3055 426 Gene3D - 32 157 IPR012340 -
Ssu4g3055 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 416 IPR027417 -
Ssu4g3055 426 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 5 424 - -
Ssu4g3055 426 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Ssu4g3055 426 CDD AAA 171 338 - -
Ssu4g3055 426 SMART AAA_5 201 340 IPR003593 -
Ssu4g3055 426 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Ssu4g3055 426 Gene3D - 339 420 - -
Ssu4g3055 426 Gene3D - 158 337 IPR027417 -
Ssu4g3055 426 Pfam AAA+ lid domain 360 403 IPR041569 -
Ssu4g3055 426 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 5 424 - -
Ssu4g3055 426 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 98 409 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3055 Ssu-Chr4 78003068 78006854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3055 170 391 Calmodulin-binding Proteins AT3G56690 37.220 1.22e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3055 K03061 - gmx:100808239 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3055 4 78003068 78006854 Ssu4g3055 4 78003068 78006854 ECH