Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3054 ATGGTGTTGGATCCAAGGCTGGTGCTGTTGGTGTTCATCAGCACCTGCATTTTGGCCGTCAATGGAGACACAGATCCAAATGACGCTGCTGCTCTAAAGGTTATGTTTCAAAGTATGAACTCACCATCCCAGCTAAATTGGAATGGTGATGATCCTTGTGGACAGTCTTGGAAAGGCATTACTTGCTCAGGCAACCGAGTCACAGAGATCAAGTTACCTGGTCTTGCACTAACTGGATCGTTGGGTTACCAGCTACAATCTTTGACATCCGTGACAAACCTAGACTTGAGTAACAACAATCTTGGTGGCACCATACCATTCCAACTTCCTCCTAATCTACAACATTTGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGAAACTCTGAATGTGGGAAACAATCATTTTACGGGCTGGATACCTGAACAATTGAAAAGCATAAACCTACAAAAGGGTGGTAATGCATGGAGCTCGGGACCTGCACCCCCACCTCCTCCTGGGACACCTCCAGTAACAAGAAACCGAGATCATAAATCTGGCAGACATTCCCCATCAGATGCTGACTCAAGTGACAGTGGAGGCAAAAAATCTGGTATAGGAGGTGGTGGAGTTGCTGGAATAGTGATCTCCATCTTGGTTGTTGGGGCAATAGTAGCATTCTTTCTGATGAAGAGAAGATCCAAAAAGTCGTTTAATGATGTTGAAAAGTTTGACAATCAACCCTTGGCTCCTCTTACTTCAAATGAAGTGCATGAAATGCATTCCATGCAAAGTTCGTCTGTAATTGACTTGAAGACATTTGATACGCCTGCTGCCCCAATAGGCCTTAAACCTCCGCCTGTTGATCGTCATAAATCATTTGATGAGGATGAGTTTTCAAAGAAGCCCACTATAGTCAATAAGCCCATTAGAGTCAAGAAGACCGTAACAGCTCCTGCAAATGTAAAATCATATTCTATAGCTGACCTGCAGATTGCTACTGGAAGTTTCAGTGTGGATCAACTTCTTGGTGAGGGGTCTTTTGGACGTGTGTACCGCGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCCGTCCTTCCCCATGATATGTCTGAAGATTTTGTAGAATTAGTTTCAAACATATCCCATTTGCATCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCACGGACAACACCTACTAGTCTCTGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACCTACCTGATGAGTACAGTAAACCGTTGATATGGAATTCACGTGTCAAGATTGCTTTGGGGATTGCACATGCTTTAGAGTACCTCCATGAAGTATGTTCACCATCAGTTGTTCATAAGAACATAAAGTCAGCCAACATATTGCTTGATGCAGATTTTAATCCCCATCTTTCCGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCagGTATTGAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGCTTGTCTGGTCATTATACTCTTAAGAGTGATGTCTATAGCTTCGGAGTCGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGGCAAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATCGATGCTTTGGCTAAGATGGTTGATCCTGCATTGGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCGGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCATTGGTTCGATTGGTGCAGCGAACAAACATGAGCAAGCGGACGTTTGGAACTGATCAAGGAGGATCCAACCGAGGGGGGGATAACCTAGAAACACAAGACATGTAA 1935 0.4382 MVLDPRLVLLVFISTCILAVNGDTDPNDAAALKVMFQSMNSPSQLNWNGDDPCGQSWKGITCSGNRVTEIKLPGLALTGSLGYQLQSLTSVTNLDLSNNNLGGTIPFQLPPNLQHLYLQNNQFTGTIDVLANLPLETLNVGNNHFTGWIPEQLKSINLQKGGNAWSSGPAPPPPPGTPPVTRNRDHKSGRHSPSDADSSDSGGKKSGIGGGGVAGIVISILVVGAIVAFFLMKRRSKKSFNDVEKFDNQPLAPLTSNEVHEMHSMQSSSVIDLKTFDTPAAPIGLKPPPVDRHKSFDEDEFSKKPTIVNKPIRVKKTVTAPANVKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPHDMSEDFVELVSNISHLHHPNVTELVGYCSEHGQHLLVSEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGIAHALEYLHEVCSPSVVHKNIKSANILLDADFNPHLSDSGLASYIPNANQVLNNNAGSGYEAPEVGLSGHYTLKSDVYSFGVVMLELLSGRKPFDSSRARSEQALVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTFGTDQGGSNRGGDNLETQDM 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3054 644 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Ssu4g3054 644 Pfam Protein tyrosine and serine/threonine kinase 341 611 IPR001245 GO:0004672|GO:0006468
Ssu4g3054 644 Gene3D Transferase(Phosphotransferase) domain 1 418 631 - -
Ssu4g3054 644 PANTHER OS01G0253100 PROTEIN 134 639 IPR045271 GO:0004714|GO:0006468
Ssu4g3054 644 Gene3D Ribonuclease Inhibitor 25 160 IPR032675 -
Ssu4g3054 644 SUPERFAMILY Protein kinase-like (PK-like) 317 611 IPR011009 -
Ssu4g3054 644 SUPERFAMILY L domain-like 44 154 - -
Ssu4g3054 644 ProSiteProfiles Protein kinase domain profile. 339 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3054 644 MobiDBLite consensus disorder prediction 183 198 - -
Ssu4g3054 644 Gene3D Phosphorylase Kinase; domain 1 302 416 - -
Ssu4g3054 644 PANTHER OS01G0253100 PROTEIN 14 128 IPR045271 GO:0004714|GO:0006468
Ssu4g3054 644 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 14 128 - -
Ssu4g3054 644 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 134 639 - -
Ssu4g3054 644 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Ssu4g3054 644 MobiDBLite consensus disorder prediction 160 206 - -
Ssu4g3054 644 MobiDBLite consensus disorder prediction 622 644 - -
Ssu4g3054 644 ProSiteProfiles Leucine-rich repeat profile. 112 134 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3054 Ssu-Chr4 77992254 78000098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3054 8 643 Strubbelig Receptor Gene Family AT1G53730 57.261 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Ssu4g3054 PK_Tyr_Ser-Thr 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3054 - - gmx:100780323 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3054 4 77992254 78000098 Ssu4g3054 4 77992254 78000098 ECH